-
Dear authors!
Good day to you.
I was wondering how I can use SWAMPy for other pathogens? Which parts of the code should I modify?
I have different reference genomes and primer sets. Is there any …
-
Hi,
I'm using your interesting code.
In SCgenotype.pl script Samtools sort doesn't accept '-f' options so I corrected with the '-o' options.
Unfortunately mpileup e summarization steps didn't run.
…
-
**Describe the bug**
When running the following cmd, `CRISPRessoAggregate --prefix tmp/CRISPResso_on_BNL17517_additional_80k --prefix tmp/CRISPResso_on_BNL17517_additional_80k-160k --name "80k"` erro…
-
Hi everyone,
Thank you for developing this useful tool! I'm currently trying to run amplicon_sorter.py on a large dataset (~6M reads) with 3x random sampling. Here’s the command I’m using:
`pyth…
-
Hi there,
Have been using your library to demultiplex libraries - 384 well illumina libraries per ONT run - which have a similar construction to Tru-seq paired indexes.
The first sets tested w…
-
HI,
Just wondering how (if) this code handles contig breaks?
Liam
-
Hi,
I am quite new in the BCR/TCRsequencing field and I wanted to try to compare TRUST4 and MIXCR on a simple dataset (amplicons of the CDR3 regions).
I have a paired end fastq with about 20'000 r…
-
when i run the program use my datas, there is no error; but it barely detection SNVs, because most of sequences was filtered and discarded, i do not know the reasons?
such as:
`76M Jun 7 09:52 K1_S…
-
Hello.
I am using version 3.2.4.
I have about 900 sets of bipartite macro genomic data all reporting the following message when running stage_two:
"No target sequence detected in file , no further …
-