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xinehc
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args_oap
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
MIT License
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UnboundLocalError: local variable 'dbtype' referenced before assignment
#66
tenethe
opened
1 month ago
2
this software had met mistake, i had changed the blastn version, diamond version， how can i solve it ?
#65
pl19940314
opened
1 month ago
3
Regarding error related to fastq files
#64
chanchalrana
opened
1 month ago
12
比对结束第一步，然后第二步，显示这个，如何解决
#63
pl19940314
opened
1 month ago
1
Question about extracted.filtered.fa
#62
HuangLoong
opened
2 months ago
1
Stage_two error
#61
HuangLoong
opened
2 months ago
5
Stage_two error
#60
HuangLoong
closed
2 months ago
0
Run stage_two yielded no results
#59
theboy97
opened
3 months ago
3
Stage_one WARNING: Duplicated sequences
#58
HuangLoong
closed
3 months ago
5
Calculated abundance for paired-end sequencing
#57
JingliangShi
opened
4 months ago
3
Calculated abundance for paired-end sequencing
#56
JingliangShi
closed
4 months ago
0
SARG version
#55
LiZhihua1982
opened
4 months ago
5
sarg nucleic acid database
#54
liyonxin
opened
4 months ago
1
Cannot install args_oap
#53
tianyi1616
opened
5 months ago
1
metadata问题请教
#52
GengY-sdu
opened
5 months ago
4
more details about the output file
#51
ML198
opened
5 months ago
2
自定义核苷酸数据库
#50
yangzuokun
opened
6 months ago
5
Installation error
#49
linki11
opened
6 months ago
16
Metatranscriptomic Data
#48
sh1ro-1
opened
6 months ago
4
An error occurred while creating the database
#47
green34567
opened
7 months ago
5
as for nanopore data
#46
gototry2000
opened
7 months ago
1
Confusing “-t” parameter in stage two
#45
Wang0293
opened
7 months ago
2
Cannot find database
#44
candyyyyyyyyyyy
opened
7 months ago
2
Documentation of the pipeline
#43
danpal96
opened
8 months ago
1
A question about metadat.txt
#42
Wang0293
opened
9 months ago
2
Is it reasonable to use diamond(blastx) instead of blast(blastx) in the ARG-OAP？
#41
jiangyoufeng
opened
9 months ago
7
error : predicted ORF based on MAG
#40
mengqiyue
opened
10 months ago
1
ARG-OAP Output file explaination
#39
pratibha-kadam
opened
10 months ago
1
Error running custom database
#38
iMay1314
opened
10 months ago
4
CRITICAL: No target sequence remained after merging structure files
#37
Yixiangzhang1996
opened
10 months ago
3
stage_two output sample lost
#36
brilliant2643
opened
10 months ago
4
Regarding output of stage two
#35
chanchalrana
opened
11 months ago
2
Input file as contig.fasta
#34
pratibha-kadam
closed
10 months ago
1
ARGs Desktop运行个性化数据库失败问题
#33
fengyuan1112
opened
11 months ago
2
Is parameter -t the meaning of the number of thread used by stage_one and stage_two?
#32
jiangyoufeng
closed
11 months ago
1
Question about use of GreenGenes database
#31
winnerk0624
opened
12 months ago
1
Question for results of risk ranking
#30
Rooobben
opened
1 year ago
2
args_oap is failing to run on a customised db
#29
alanxelena
opened
1 year ago
17
What does the unnormalized file actually contain?
#28
alanxelena
opened
1 year ago
2
stage one fails and makes empty output directory
#27
osvatic
closed
1 year ago
6
Question about normalization
#26
Valentin-Bio
opened
1 year ago
19
Working with paired end data
#25
Valentin-Bio
closed
1 year ago
2
merge from upstream
#24
ningzichun
closed
1 year ago
0
Add a new gene to the database
#23
HUANGYming
closed
1 year ago
0
Add a new gene "capO" to the database
#22
HUANGYming
closed
1 year ago
0
FASTQ reads headers
#21
Biofarmer
opened
1 year ago
2
please help me when i run args_oap stage_one -i inputfqs -o output -f fa -t 8 i got
#20
darwin4442
closed
9 months ago
0
A question about parameters
#19
ZhangMin-123
opened
1 year ago
1
INFO: Building databases ...
#18
hubeilanl
closed
1 year ago
2
Can't open online URL
#17
Damianyangyang
opened
1 year ago
1
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