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In line with expanding coverage of assays/testing, we need to import terms for antibodies and antigens into IDO Core.
I found that many ontologies have different terms for these. Unfortunately, mos…
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If in the sample sheet an entry for the `Sample_Project` is not matching our predefined values `Antibodies/Metagenomics/Plasmids/Resistance/Other`, it should automatically be assigned to the project `…
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Hello, could you add a REAME to the `data/training data` folder with a description of what each file is for?
Could you add the original training data to this directory?
https://github.com/giff…
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install yarn, thefuck, antibody
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- Ask A. Bonvin for data (or at least samples of them)
- They are in the process of publishing another study/dataset. They are also working on these systems and plan to generate a larger dataset. …
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Thanks for sharing, interesting insights! When running the second cell of the colab notebook, this shows up in the log
```
Error downloading object: Antibody_DB/data_files/Data1.zip (03b4094): Smu…
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Title: A human monoclonal antibody blocking SARS-CoV-2 infection
### Please paste a link to the paper or a citation here: https://www.biorxiv.org/content/10.1101/2020.03.11.987958v1.full.pdf
…
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When running the pipeline on a single sample, e.g.:
```
group,replicate,fastq_1,fastq_2,antibody,control
Library,1,Library_R1.fastq.gz,Library_R2.fastq.gz,,
```
the script `check_design.py` r…
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Project UUID: f81efc03-9f56-4354-aabb-6ce819c3d414
Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Project Short Name: Multip…
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It would be handy to pass a metadata argument (individual dictionary or even ome xml) when creating the metadata with tifffile in the pyramid or list writer.
Basically to name each channel with the…