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Hi, may you please help provide a detailed way to use Cacoa on a seurat object?
I am getting errors I am not sure the reason of, e.g
when running "cao$estimateCellLoadings()"
I get:
"Error in h(…
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Hi,
Not necessarily a bug report and not quite enhancement depending on your thoughts. I'm wondering if it's possible to adapt the current `FindMarkers` function to perform DE testing on module sc…
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it's possible to select cells -> Edit>name selection, but then it isn't possible to Edit>Find Cells by the named selection.
I'd really like to select the cells in some region of a UMAP with a part…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SalasLab/HiBED
Confirm the following by editing e…
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Hi.
Thanks for the excellent job.
Here's an old question about when to use Integrated assay vs RNA assay.
1. What's the difference between Integrated assay data slot and RNA assay data slot? And …
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Is it possible to generate a list of genes that drive the significance of the enriched cell type?
Thanks!
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Discussion on how to construct meta titles and descriptions:
https://docs.google.com/document/d/1R8ocUllm8EV3SPd5XBkY1rIC8sZgYVV1A93dsA7QujQ/edit#heading=h.kh7oxyc39a8c
DoD:
1. Add tissue descriptio…
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1. Given a marker from one cell type, Astrocytes
2. Calculate the mean for each cluster (C1, C2, C3, C4, C5), then rank them as S1, S2, S3, S4, S5
3. Compare S1 with S2 (z test)
if significant,…
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Dear team,
I appreciate very much the effort you have put into the development of this package. I'm working with a hyperframe of replicated point patterns. Following the guidance in the book, I hav…
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Created a conda env to try and avoid versioning issues:
``` cat goshifter.yml```
```yml
name: goshifter
channels:
- defaults
- anaconda
- conda-forge
- bioconda
dependencies:
- p…