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Hello,
Thank you for your great tool!
I have been trying to generate error free illumina reads using the following command:
```
command = [
"mason_simulator",
…
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I employed bcftools to extract info of specific samples. And the sample I expected to extract is FD22608750.CEL_FD22608750.CEL. When I used bcftools to extract its own info from the merged vcf of 1700…
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We cannot just expose the Alma dump because since there are local (IZ) fields we have to suppress. Since https://github.com/hbz/lobid-resources/issues/1687 we have suppressed these so that in lobid-r…
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I'm using `fgoxide` to write a test involving `.vcf.gz` files.
I've defined some input lines like
```rust
let tempdir = TempDir::new().unwrap();
let io = fgoxide::io::Io::default();
let inp…
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I'm attempting to write a small utility that process bam records and I can't figure out the aysnc API. I'm attempting to adapt the noodles-bam/examples/bam_reheader_async.rs example and I've been runn…
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Hi,
I am interested in assessing differential splicing between two populations.
I got PE-50 stranded mRNA libraries, which were mapped with STAR, and I thought on using the output bam files to run…
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We could use [`std::fmt::Display`](https://doc.rust-lang.org/std/fmt/trait.Display.html) but what if we have VCF input and want to write, e.g. BCF output.
Currently, we're using standard outputting…
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This was the command line used for running the HAHap tool:-
python HAHap phase HG002_heter.vcf HG002.hs37d5.2x250.bam phased.vcf
This is the error i got
=== Build Connected Component ===
Traceba…
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I hope this is the right place to ask! First of all, this looks really nice, and I would love to replace the implementations I have with this!
Scanning through the source briefly, I came to the fol…
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I am using STAR 2.7.9a. In the last two days, I am getting an error when running alignments with STAR (independently from the data and genome index I am using). What could be causing this error, which…