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@fehrhart just told me about the Chemical Translation Service [CTS](https://cts.fiehnlab.ucdavis.edu/), described [here](https://doi.org/10.1093/bioinformatics/btq476). Since @egonw is one the paper:…
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Just to keep track of the remaining "problem children" from the recent sync of all approved pathways, here's a list pathways that can't be converted to pvjson, svg and png using our main script. I de…
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OS: `Windows 10 Home 1909`
Version: `OnionShare 2.3.1`
Steps to reproduce:
- Keep the setting `Use the Tor version built into OnionShare` as is.
- Select `Use built-in obfs4 pluggable transports…
li5lo updated
2 years ago
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According to https://wiki.openphacts.org/index.php?title=IMS_2.0_reload#81:_Ensembl_to_Uniprot_.28Homo_Sapiens.2C_translation.29, the ensembl to uniprot linksets have the justification "gene". If it i…
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After lots of careful curation, there are only four resources listed in this repository that I can't quite figure out
| datasource_name | system_code | website_url | l…
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I would suggest to split the layout from the content fully. That would also mean no HTML tags in the JSON field content, like in https://raw.githubusercontent.com/youphendriks/TGX-overview/refs/heads/…
egonw updated
1 month ago
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### Description of the issue:
* Rhea and ModelSEED IDs for both mets and rxns are missing from current model.
**I hereby confirm that I have:**
- [x] Tested my code with [all requirements](…
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Would anyone find it useful for BridgeDb to support the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy) for identifying organisms? Some time ago, I mapped each of our supported organisms to its…
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Could you please clarify the distinction between
- mapping_provider if the source indicates "where the mapping was pulled from"
- subject_source if the source indicates which terminology the source…
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Gene-variant mappings are probably too large (and not part of webservice I believe, right @fehrhart ?). But we could have interaction mappings also run from this website... so mapping from rhea to Keg…