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bridgedb
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datasources
Repository with the BridgeDb data source.
Creative Commons Zero v1.0 Universal
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request for adding this species: Rosmarinus officinalis
#50
egonw
closed
1 month ago
4
figure out the state of EcoGene
#49
egonw
opened
4 months ago
0
figure out new URL pattern of MatrixDB
#48
egonw
opened
4 months ago
0
Removed a discontinued database not used in WikiPathways
#47
egonw
closed
1 month ago
1
Adds Solanum tuberosum
#46
egonw
closed
4 months ago
2
request for adding this species: Solanum tuberosum
#45
egonw
closed
4 months ago
2
update the namespace for HGNC and Ensembl
#44
tabbassidaloii
closed
4 months ago
4
[WIP] Transition to UniProtKB
#43
egonw
opened
1 year ago
2
ensure alignment with Bioregistry.io
#42
egonw
closed
1 year ago
1
ensure alignment with Identifiers.org
#41
egonw
closed
1 year ago
1
Update BridgeDb Datasources for UniProtKB
#40
egonw
closed
1 year ago
1
Agree on reusing the "S" system code
#39
egonw
closed
1 year ago
2
Agree on using "UniProtKB" as full name
#38
egonw
closed
1 year ago
2
Look into bioregistry prefix for OpenTargets
#37
hasanbalci
closed
7 months ago
1
Material datasources
#36
egonw
closed
1 year ago
0
Update syscode for Evidence Ontology
#35
hbasaric
closed
2 years ago
0
Update datasources.tsv
#34
hbasaric
closed
2 years ago
0
Adding categories for some datasources
#33
hbasaric
closed
2 years ago
0
fix prefix ecocyc
#32
mkutmon
closed
2 years ago
0
Fix three examples
#31
cthoyt
closed
2 years ago
3
Add missing bioregistry links
#30
cthoyt
closed
2 years ago
1
Curate remaining entries to the Bioregistry
#29
cthoyt
opened
2 years ago
7
Add test that examples match regular expressions
#28
cthoyt
closed
2 years ago
2
Add Bioregistry prefixes
#27
cthoyt
closed
2 years ago
6
Add additional column for bioregistry
#26
DeniseSl22
closed
2 years ago
1
Adding an additional column
#25
DeniseSl22
closed
2 years ago
0
adding sheep
#24
tabbassidaloii
closed
2 years ago
0
Add data integrity tests for MIRIAM URIs/URNs
#23
cthoyt
closed
2 years ago
16
Add Bioregistry prefix column
#22
cthoyt
closed
2 years ago
1
Updated example HMDB ID to HMDB4/0 structure
#21
DeniseSl22
closed
2 years ago
1
Many non https addresses in the tsv files
#20
Chris-Evelo
closed
4 months ago
6
Minor: column names are not great
#19
AlexanderPico
closed
1 year ago
2
Added PW and ORCID. Corrected PATO
#18
Finterly
closed
3 years ago
1
Unclear origin of the UCSC genome browser "uc\d{3}[a-z]{3}\.\d" type identifier
#17
egonw
opened
3 years ago
0
Added PATO to datasources.tsv
#16
Finterly
closed
3 years ago
0
Added ISSN and PATO to datasources.tsv
#15
Finterly
closed
3 years ago
1
Added ISSN in datasources.tsv
#14
Finterly
closed
3 years ago
1
added ISBN in datasources.tsv
#13
mkutmon
closed
3 years ago
0
Update HGNC linkouts
#12
DeniseSl22
closed
1 year ago
15
update of VMH metabolite links
#1
ithiele
closed
3 years ago
2
WikiPathways linkouts
#2
fehrhart
closed
3 years ago
8
Update datasources.tsv
#9
DeniseSl22
opened
5 years ago
1
Add taxonomy IDs to organism table
#10
AlexanderPico
closed
3 years ago
0
Unrecognised HGNC URI pattern
#6
ianwdunlop
closed
4 months ago
4
example_identifier for SwissProt
#11
ariutta
closed
4 months ago
2
Which system codes for ChEMBL?
#7
stain
opened
9 years ago
6
Incorrect linkout patterns or example identifiers
#8
ariutta
closed
4 months ago
4
Miriam identifiers for Gramene sources in datasources.txt
#4
ariutta
opened
9 years ago
6
Incorrect linkout patterns for Gramene Rice and Rice Ensembl Gene
#3
ariutta
closed
1 year ago
1