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Here's a pull request with a fix: https://github.com/maximilianh/cellBrowser/pull/194
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I have noticed that UCSC CellBrowser for some reason doesn't work well on use-galaxy.eu. For instance here is a history that contains a result from it (press the eye on the CellBrowser result to displ…
pcm32 updated
3 years ago
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In the UCSC CellBrowser tool for Galaxy the idea is that the user has only a single dataset to see. Currently, since Galaxy 20.01 or 19.09, something in the Galaxy javascript seems to break the view o…
pcm32 updated
3 years ago
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Hi,
I install the cellBrowser use conda (`conda install -c bioconda ucsc-cell-browser`) and use sample data to test whether it works.
Here is the code that I'm running:
```
curl -s https://cell…
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e.g. i made these two groups:
Is it possible to compare expression of a single gene in these two groups. Or only both groups vs all other cells?
inodb updated
3 years ago
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Hi there,
In a larger data set of about 91K cells, it takes about a minute to color the cells after selecting a gene (say 'IL6').
I'm using google firebase to host it and I'm using the dev version…
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Hello, recently I ran your example of integrating RNA and protein analysis of CBMC dataset by CITE-seq. Although I followed your procedure, it also occured error. The error is:
> library(Seurat)
> l…
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Hi,
I am trying to setup cellbrowser lcoally on my machine. When I run it on sample data 'mini' with the following command,
`../../src/cbBuild -p 8888 -i cellbrowser.conf -o ~/public_html/cells/`
i…
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Apparently I have run into a case where a gene symbol or id is being intepreted as a numpy int, so I guess we need to be more defensive on that concatenation line:
```
INFO:root:Writing gene-by-ge…
pcm32 updated
4 years ago
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Hi,
Thanks for developing such a useful tool. I routinely generate cellbrowsers for multiple unrelated projects and have been testing out using dataset hierarchies to organize each independent pro…