-
The current implementations of the `getIntensity()` and `getInverseIntensity()` methods for the exponential growth population model are numerically unstable for extremely small but non-zero growth rat…
-
Dear Emmanuel
I am writing because I have been running the coalescentMCMC function and I have several questions.
1) How to analyse the output of the package and get the average values of the si…
-
Many species are partial selfers; for instance *C. elegans* (see #834) has a selfing rate of about 99.9%. SLiM has a "selfing rate" option that we can use directly; for msprime we'd need to rescale th…
-
I've left a space in the docs (four paragraphs down at https://tskit.dev/tsdate/docs/latest/popsize.html) to place a population-size-over-time plot. I think this will involve plotting the IICR over ti…
-
In the meeting 2020-01-14 we discuss the current (mis)handling of sex chromosomes. We're not handling these properly at the moment in the shipped software, so we need to do something about it. Options…
-
#1825 added support for alignments, which passed through arguments for supporting missing data to the haplotypes method. However, the initial implementation was wrong. Consider the following example:
…
-
Hello all,
I am interested in simulating large "landscapes" of connected demes parameterized by species distribution models for neutral demographic inference in non-model species. A tough line I'm …
-
This is also used to look for selection. See also #1314 - maybe this is related, as each coalescence is the end of a linage.
-
```
http://bcbio.wordpress.com/2013/05/22/scaling-variant-detection-pipelines-for-wh
ole-genome-sequencing-analysis/
```
Original issue reported on code.google.com by `geo...@marsel.is` on 28 May 2…
-
Hi Eric,
I was using strataG installed from github and have been having an issue with fsc2gtypes(). The current version is giving this error when I try to simulate some dna seqeunces and read them b…