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Hi all,
I use mixscape to evaluate a CRISPR screen. The CRISPR screen is based on the 10X pipeline and currently contains only one replicate. After loading the data, pre-processing and norm…
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Copied below from the other issues here
- [x] Feb 28 Tutorials are in the GTN
- [x] Feb 28: [Record a video](https://gallantries.github.io/video-library/events/smorgasbord2/recording.html) following…
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Add support for the JAX backend for PyMC. It seems there are substantial speed gains even just on the CPU, though GPU is worth trying to get working. Seems like the only change is to use a different "…
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After reviewing the Biolink Model entities and relations for gene expression data, I have some suggestions.
There is both gene (or protein) expression level data and relative differential express…
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To prepare for the `beta` launch of the Partner Preview Platform, can we please adjust the "Open Targets CRISPR" detail widget on the evidence page?
- [x] Remove the "CRISPR screen library" column
…
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Hello,
I noticed in the scRNA-seq and CRISPR screen tutorial you had different thresholds for the cell-free and droplet cutoffs.
I'm assuming the most important part is the cell-free portion, whic…
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https://mp.weixin.qq.com/s/zGUmK8iPmV2u1ktNUxzmFg
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/1Mi27L6zYCebZvu0wF0kKw
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**Description of bug:**
We tested using [AdapterRemoval](https://github.com/czbiohub/nf-core-crisprvar/pull/15) and [FLASH](https://github.com/czbiohub/nf-core-crisprvar/pull/12) to merge reads for…
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https://mp.weixin.qq.com/s/qVecg3jZUkXzZaqB4qFKHg
ixxmu updated
2 years ago