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There are potential use cases where extracting only a few specific tiles from a .czi file would be desirable, such as inspecting image regions which cross tile edges. An external tool could examine du…
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Hi, I am trying to install the dependencies for this. After I cloned it I ran npm i and this is what I got:
pjs@3.1.0 install C:\Users\Theob\Desktop\czi-prosemirror\node_modules\pjs
make commonjs
…
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Hi,
I am currently trying to use bioformats (and python bioformats) to read some CZI files generated by a Z.1 lightsheet. The series is a tiled imaging of a single channel and was done with a dual …
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Per @gspowley and @KiterLuc there is an option in the C++ core API such that when global-order writes are done, fragments from multiple chunk-writes may be extended/grown rather than resulting in mult…
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## Description
I'm loading a czi image with napari-aicsimageio - ['Plate1-Blue-A-12-Scene-3-P3-F2-03.czi' from the OME sample data](https://downloads.openmicroscopy.org/images/Zeiss-CZI/idr0011/Plate…
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A bit depth of 14 is standard for CZI images, and I have no problems opening original tiled images, or fused/unfused (according to Zen) stitched results at that bit depth.
When saving images in 8bit …
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## System and Software
* aicspylibczi Version: 3.0.1
* Python Version: 3.9
* Operating System: Ubuntu 20.04
## Description
*A clear description of the bug*
Using the test file `aicsimageio…
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We've been awarded a grant to serve open science cloud infrastructure and training for communities in Latin America and Africa. This is a tracking issue to collect information and major tasks to accom…
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One of the major goals from our CZI grant is to deploy and run dedicated infrastructure for communities of practice in Latin America and Africa. This is a tracking issue to describe the major things w…
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### Feature Description
Crazy Idea: bring the aicspylibczi code into this repo so it can be maintained separately. Currently aicspylibczi is used by both aicsimageio and bioio-czi.
### Use Case…