single-cell-data TileDB-SOMA issues

single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

MIT License

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issues

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[Backport release-1.12] Use core 2.24.2

#2778 github-actions[bot] closed 9 hours ago
0
Use core 2.24.2

#2777 johnkerl closed 9 hours ago
2
[python] Update a confusing filename

#2776 johnkerl opened 1 day ago
1
[r] TileDB-SOMA 1.12.2

#2775 johnkerl closed 1 day ago
0
[Backport release-1.12] Split nanoarrow into a separate object library

#2774 github-actions[bot] closed 1 day ago
0
[Backport release-1.12] [c++] General CMake clean-up

#2773 github-actions[bot] closed 1 day ago
0
Use core 2.24.1 on `main` branch

#2772 johnkerl closed 1 day ago
1
[Backport release-1.12] [python] `devtools/outgestor` stats and neaten

#2771 github-actions[bot] closed 2 days ago
0
[python] `devtools/outgestor` stats and neaten

#2770 johnkerl closed 2 days ago
1
[Backport release-1.12] [python] Continue to use `tiledb.Ctx`'s config until it is removed

#2769 github-actions[bot] closed 1 day ago
0
[python] Continue to use `tiledb.Ctx`'s config until it is removed

#2768 nguyenv closed 3 days ago
1
[Backport release-1.12] [python] Remove a debug statement

#2767 github-actions[bot] closed 3 days ago
0
[python] Remove a debug statement

#2766 johnkerl closed 3 days ago
1
[Feature request] `ExperimentAxisQuery.to_anndata()` should drop unused categories on axis data frames

#2765 pablo-gar opened 4 days ago
0
[c++] Create helper function for casting bits to uint8

#2764 nguyenv opened 4 days ago
1
Split nanoarrow into a separate object library

#2763 jp-dark closed 1 week ago
1
[c++] General CMake clean-up

#2762 jp-dark closed 1 week ago
1
how to list values for query filter ?

#2761 HugoCornu opened 1 week ago
1
Daily GitHub Actions Build Fail on Sun, June 23rd 2024

#2760 github-actions[bot] closed 1 week ago
1
[r] TileDB-SOMA 1.12.1

#2759 johnkerl closed 1 week ago
1
[Bug] Incorrect install requirements on the latest tiledbsoma 1.12.0

#2758 Koncopd closed 1 week ago
4
Use core 2.24.1 on `release-1.12` branch

#2757 johnkerl closed 1 week ago
1
Use core 2.23.1 on `release-1.11` branch

#2756 johnkerl opened 2 weeks ago
1
[r] Support sparse nd array writes case

#2755 eddelbuettel opened 2 weeks ago
0
Daily GitHub Actions Build Fail on Thu, June 20th 2024

#2754 github-actions[bot] closed 1 week ago
2
[c++] Remap `TileDBError` to `TileDBSOMAError`

#2753 nguyenv closed 2 weeks ago
7
[python] [NO MERGE UNTIL 1.14] Remove tiledb-py dependency

#2752 nguyenv opened 2 weeks ago
0
[c++/python] Add `SOMAArray::update_columns` in C++

#2751 nguyenv opened 2 weeks ago
0
[spatial] Update Visium ingestor to use points instead of geometries for spots

#2750 jp-dark opened 2 weeks ago
0
[python] Python GIL not being released in a number of cases where it should be

#2749 johnkerl opened 2 weeks ago
0
[Backport release-1.12] [r] Connect re-indexer to blockwise iterator

#2748 github-actions[bot] closed 2 weeks ago
0
[r] TileDB-SOMA 1.12

#2747 johnkerl closed 2 weeks ago
0
[Backport release-1.12] [python] Pin to numpy < 2.0 for 1.12 release

#2746 github-actions[bot] closed 2 weeks ago
0
[python] Pin to numpy < 2.0 for 1.12 release

#2745 johnkerl closed 2 weeks ago
1
[python] Numpy 2.0

#2744 johnkerl closed 2 weeks ago
1
Daily GitHub Actions Build Fail on Mon, June 17th 2024

#2743 github-actions[bot] closed 2 weeks ago
2
[r] Connect re-indexer to blockwise iterator

#2742 mojaveazure closed 2 weeks ago
0
[python] Replace `tiledb.VFS` with `clib.VFS`

#2741 nguyenv closed 2 weeks ago
1
[python] Remove tiledb-py from top-level src (sans `io` and `options`) 5/5

#2740 nguyenv closed 2 weeks ago
1
[python] Work around pyarrow>=13 issue on MacOS, `release-1.12` branch

#2739 johnkerl closed 3 weeks ago
2
[python] Work around pyarrow>=13 issue on MacOS, `release-1.11` branch

#2738 johnkerl closed 3 weeks ago
2
[python] Work around pyarrow>=13 issue on MacOS, `release-1.10` branch

#2737 johnkerl closed 3 weeks ago
2
[python] Replace `TileDBObject` with `SOMAObject`; Remove `tiledb.TileDBError` usage 4/5

#2736 nguyenv closed 2 weeks ago
1
[python] Use bindings for `SOMAGroup` 3/5

#2735 nguyenv closed 2 weeks ago
1
[python] Work around pyarrow>=13 issue on MacOS, `main` branch

#2734 johnkerl closed 3 weeks ago
3
[python] Release GIL where necessary in pybind11 code

#2733 nguyenv opened 3 weeks ago
2
[python] Add `pybind11` bindings for `SOMAGroup` 2/5

#2732 nguyenv closed 2 weeks ago
1
[c++] More `SOMAGroup` refinements 1/5

#2731 nguyenv closed 2 weeks ago
1
[r,c++] Support dense nd array write case

#2730 eddelbuettel closed 2 weeks ago
4
[spatial] Add presence matrices to experimental ingestor

#2729 jp-dark closed 3 weeks ago
1