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# TODO
* [ ] Close this issue when the **great fork merge** happens.
# Original comment
Like the thread in the [other repo](https://github.com/ioccc-src/mkiocccentry/issues/171) this is to he…
xexyl updated
9 minutes ago
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I was wondering what was your general workflow for working with an expanded annotation from TALON for general differential gene and transcript expression analysis.
After generating an expanded ann…
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I have more than one `t` objects for the trans_diff classes for different differential abundance methods. In each method I ran `plot_diff_bar` and `plot_diff_abund` and I get outputs successfully for …
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**Submitting author:** @IlianPihlajamaa (Ilian Pihlajamaa)
**Repository:** https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl
**Branch with paper.md** (empty if default branch):
**Version:** 0.…
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Hello,
I do not report an issue here but have a question: Is it appropriate to use ANCOM-BC to perform differential abundance analysis of the KOs from picrust2 output? Unlike the ASV/OTU table, thi…
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Hi! We're planning on submitting a major rliger upgrade to CRAN in the coming days to weeks. It contains a fairly large number of API changes and (more relevant to your purposes) object st…
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Testing the differential abundance creates the following error and it does make the book rendering fail.
```r
Loading required package: foreach
Attaching package: ‘foreach’
The following obj…
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Condition: HIV
URL: https://journals.asm.org/doi/pdf/10.1128/mbio.01229-22
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https://pubmed.ncbi.nlm.nih.gov/30547792/
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Hi @JenniNiku ,
a colleague recommended your R package for GLLVM and I am very curious, how you applied this approach to microbial data, specifically sequencing data. As sequencing data is compositio…