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Hi! Thanks for developing such an amazing tool!
I was trying to apply TOBIAS with paired-end DNAse-seq data and I was hoping to get your feedback on the preprocessing I've modified:
1. Merged b…
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https://mp.weixin.qq.com/s/L5ikz6qmCTSoO4ut4ahQvg
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## **Describe the bug**
I installed the pipeline a few days ago and am trying to test it on a small ATAC-seq dataset from ENCODE. The workflow spit out some fatal errors and stopped, seemingly after …
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### Background
The [central dogma of molecular biology](https://en.wikipedia.org/wiki/Central_dogma_of_molecular_biology) describes the flow of molecular information between genetic systems. Each of …
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Dear Dr.Karbalayghareh,
Hope all is well!
I'm interested in your paper Chromatin interaction–aware gene regulatory
modeling with graph attention networks, especially on Figure 3. …
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There are some tools that can be used to simulate multi-omics dataset. Maybe a new category could be added?
Here are a few I know:
- 2016 - [InterSIM](https://cran.r-project.org/package=InterSIM…
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sr320 updated
2 years ago
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> TypeError: linkml_runtime.linkml_model.meta.Example() argument after ** must be a mapping, not extended_str
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with column order annotations
```
analysis_type
collection_date_inc
collection_time
collection_time_inc
dna_absorb1
dna_absorb2
dna_collect_site
dna_concentration
dna_cont_type
dna_cont_w…
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Hi, when I ran the command `caper run chip.wdl -i https://storage.googleapis.com/encode-pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI_subsampled_chr19_only.json --conda`
I get the erro…