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I installed python3
biopython
pysam
gffutils
pandas
cmake
samtools
zlib in a newly created conda environment.
```
conda create -n asgal -y
conda activate asgal
conda install python=3…
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Update #438
Currently the downloads are saved to `$output/$species`, and the JSON files are saved to `$output`. Instead, this should be the pattern.
```
$output/$species/download
$output/$spec…
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I noticed that the "Ensembl Gene" link does not work for some species, and the link needs updating.
The…
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7217: D. ananassae
SRX247000 - info: 5-7 days post eclosion - mapped on FBdv:00007026 mature adult stage
SRX247001 - info: 5-7 days post eclosion - mapped on FBdv:00007026 mature adult stage
SRX054…
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I am trying to use `searchyll` to add ElasticSearch (ES) capabilities to my Git-Page website. My Git-Pages site is made up of "pages" not "posts". So I wonder if that's the root of the issue? (Also…
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Note to users:
*tximeta* is updated with the Bioconductor release cycle (every 6 months). Older, non-release versions of *tximeta* cannot be modified (there are frozen once the release/devel cycle …
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Hi,
I would like to use tamgram to identify the location of transposable elements in Drosophila, however when I run tangram_scan I get a segmentation fault. I suspect that tangram_bam is not working…
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* **PTHR ID & PTN node:**
I have a few annotations for cyclosporin A binding from lots of sources. It seems odd since cyclosporin is a compound isolated from soil fungus and used as an immunosuppre…
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Hi there,
I'm currently evaluating whether we could use kallisto/pizzly for fusion gene prediction. However, for some samples I realized that kallisto is somehow freezing at BAM indexing (waited for …
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### How to quantify?
### Quantification is very important for me; it is my purpose.
_________________________________________________________________________________________________________
"py…