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TODO: report on clashes
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Hello,
By creating models for secondary metabolites biosynthesis I realized that part of the ChEBI chemicals are not available with the tool.
As an example, within the P. expansum patulin biosynthes…
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As discussed at the end of last year, we think there should be an 'easy' way to increase the number of RHEA ids mapping to catalytic activities other than me doing it by hand.
Basically,
Scan ontol…
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Hi,
I am trying to run Interproscan on an hpc and I am getting various errors. I have included both the errLog and outLog files below. When I run ./interproscan.sh I get:
`Welcome to InterProSca…
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Hey @a-r-j, just pinging back here as promised yesterday with what probably could be considered a design doc for Graphein. I'm excited about this! I also know that my memory is gradually degrading as …
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Hi GO,
A recent paper published in Cell (PubMed=38821050) shows that the polyprenol reduction in dolichol biosynthesis is performed by different enzymes and steps instead of one.
It was initiall…
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id: GO:0016443
name: bidentate ribonuclease III activity
namespace: molecular_function
def: "Catalysis of the digestion of double-stranded RNAs into 20 to 30-nucleotide products. These products typ…
sjm41 updated
4 months ago
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EC:2.1.1.10 (https://enzyme.expasy.org/EC/2.1.1.10) says:
Name: homocysteine S-methyltransferase
Reaction: L-homocysteine + S-methyl-L-methionine H(+) + 2 L-methionine
Comment: The enzyme uses S…
sjm41 updated
1 month ago
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id: GO:0008997
name: ribonuclease R activity
namespace: molecular_function
def: "Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction, leaving an …
sjm41 updated
4 months ago