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Avoids race condition w/ read trimming and splitting
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Hello,
I have running FASTQC 90 fastq files in non-interactive way. My instance running for a long time, and it seems like not stopping. When I monitor the process, it shows the CPU and network usa…
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![bismark_mbias-CpG_R1](https://github.com/FelixKrueger/Bismark/assets/66713655/44c3c186-28de-4329-bafb-53805a24d9c0)
![bismark_mbias-CpG_R2](https://github.com/FelixKrueger/Bismark/assets/66713655/c…
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For the fastqc_tables_all.py, it calls the script fastqc_plot_data.py but the script in the current release.
Cheers,
Julien
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Admin interface tells me both that I have fastqc installed and that I don't have fastqc installed. The issue once again lies in in the minor updates. The new UI does not display them. cc @guerler
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Hi!
I installed the package in R and tried to run it (using the fastqc() function) but there was a check on whether or not my system was unix based and gave an error.
I was wondering if either f…
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"Basic Statistics" module of fastqc is included in fastqc module's "Status Checks" plotting as well for calculation of `Percentage of modules failed in FastQC report` in general statistics. However th…
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Most of the time, users won't have sudo access, so won't be able to run the nextflow pipeline via sudo. When I ran the nextflow pipeline as mdstengl w/out sudo, I got "WARN: Failed to publish file:" …
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Then we would have a complete pipeline :)