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open2c
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distiller-nf
A modular Hi-C mapping pipeline
MIT License
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24
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Singularity no space left in tmp directory
#189
SR-Epi-lab
opened
1 month ago
0
Skip deduplication for libraries with UMI
#188
ChristopherBarrington
opened
5 months ago
0
Distiller dsl2
#187
golobor
closed
9 months ago
0
Help with "Error executing process > 'map_parse_sort_chunks...'
#186
jmteix
closed
1 year ago
4
which reference should I cite?
#185
jane373
opened
1 year ago
1
filter with non-int columns
#184
Phlya
opened
1 year ago
0
distiller 0.3.5 roadmap
#182
agalitsyna
opened
1 year ago
1
Support of minimap2, bam mem2 and bwa aln
#181
agalitsyna
opened
1 year ago
1
Docker update for pairtools 1.0*
#180
agalitsyna
closed
1 year ago
0
update example cluster config - to match current distiller
#179
sergpolly
opened
1 year ago
1
bam files recycling
#178
agalitsyna
opened
2 years ago
0
distiller with an option to process with minimap2
#177
agalitsyna
opened
2 years ago
0
library (group) names can't be numerical
#176
Phlya
opened
2 years ago
0
how memory limit gets specified in cluster using
#175
ryao-mdanderson
opened
2 years ago
0
Optional direct fastq downloads from ENA instead of sra-tools
#174
nvictus
opened
2 years ago
0
Iterative mapping
#173
chorzow
closed
2 years ago
2
Filter stats option.
#172
agalitsyna
opened
2 years ago
18
Filter stats
#171
agalitsyna
closed
2 years ago
1
Bug: split: output file suffixes exhausted
#169
efriman
opened
2 years ago
0
Allow DRR accessions; add a comment line for sra-tools ncbi requirement
#168
agalitsyna
closed
2 years ago
1
distiller-nf run failed at executing process > 'bin_zoom_library_pairs‘
#167
hzjsxu
closed
3 years ago
1
Error: Process `map_parse_sort_chunks (library:HSPR2 run:lane1 chunk:0)` terminated with an error exit status (140)
#166
hzjsxu
closed
3 years ago
4
Remove duplicate reads in sam/bam files
#165
zhang-jiankun
closed
3 years ago
0
Fix zoomify with no balancing
#164
Phlya
opened
3 years ago
1
Running without duplicates filtering
#163
magnitov
closed
3 years ago
11
process from 4DN?
#162
gfudenberg
opened
3 years ago
0
Error when trying to run on test dataset
#161
papelypluma
closed
3 years ago
13
where can I get the specific instructions of the software
#160
rachelzhu123
closed
3 years ago
0
fastp missing from docker image?
#159
ChristopherBarrington
closed
1 year ago
5
add phasing
#158
golobor
opened
3 years ago
0
fastq-dump fails with "This sra toolkit installation has not been configured." when docker is disabled
#157
agalitsyna
opened
3 years ago
1
unexpected end of file error
#156
sabrsyed
closed
3 years ago
5
Option to use fastq-dump --split-files, instead of pyfilesplit
#155
mimakaev
closed
3 years ago
5
What the algorithm is used for balancing Hi-C matrix?
#154
shappiron
closed
3 years ago
1
add fastp trimmer to the docker image so users can do trimming if needed
#153
mimakaev
opened
4 years ago
0
why doesn't distiller-nf require a restriction enzyme option?
#152
shenscore
closed
4 years ago
2
trim option
#151
gspracklin
closed
3 years ago
0
input verification - check if the folder doesn't already have ./work and ./results from tests
#150
golobor
opened
4 years ago
0
[89/ab2821] NOTE: Process `map_parse_sort_chunks (library:your_library_name_1 run:lane1 chunk:0)` terminated with an error exit status (127) -- Execution is retried (1)
#149
gopel
closed
4 years ago
4
Fixed testing commands example
#148
molsim
closed
3 years ago
0
Input verification - ensure no duplicated input files
#147
Phlya
opened
4 years ago
0
built-in adaptor trimming
#146
gspracklin
opened
4 years ago
4
sra download seems to be broken now - some of the ftp links lead nowhere
#145
sergpolly
opened
4 years ago
11
Have an option to use fastq-dump even to download a whole .sra file
#144
mimakaev
opened
5 years ago
0
Set up travis deployment of docker image
#143
nvictus
closed
5 years ago
0
having no map options, i.e. empty dict, leads to nextflow error
#142
sergpolly
opened
5 years ago
1
distiller (bwa mem) cannot handle Hi-C data sequenced with 25bp
#141
sergpolly
opened
5 years ago
9
update readme about custom HW profile
#140
sergpolly
closed
5 years ago
2
update to latest cooler; bump version; docker to be rebuilt
#139
sergpolly
closed
5 years ago
4
Ghpcc
#138
sergpolly
closed
5 years ago
4
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