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Hey guys,
Probably a stupid question but is there a way (or a simple to add feature?) to choose the name of the genotype fields when creating a merged pVCF? For example, I am trying to create a pV…
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Hey all,
I would like to use G2P software for my population genetics analysis. I converted the dbSNP VCF file into a ped and map file but when I start a single population simulation I get no result…
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Hello there,
Thank you for developing CSS! We are trying to use it on a set of Seurat objects created via Seurat_V5.
Basically, I have 2 Seurat objects each from a separate experiment. I merge…
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1. pgen can store and output dosage from the imputed genotypes
2. our existed pipeline should be able to works on pgen/bim/fam file sets, which leads to the minimum amount of change. (test pending)
…
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Hi,
I performed the workflow on multiple mixed samples, retrieving correctly the different genotypes, per sample.
I was wondering what you can suggest to compare the different mixed samples, that sh…
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Hi I'm Erick,
I've been using Garlic with only tped and tfam files, I'm trying to include the tgls file, but something that is not clear for me is the likelihood value format. I'm trying with the f…
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Need to write a function that will read a bunch of files. I am thinking:
- A phenotype file
- A sequence of genotype files, one per chromosome
- A sequence of marker info files, one per chromosome…
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スラッシュやカッコやID以外の文字列の意味を確認し、MOLECULAR_DATAを適切なデータセットに紐づける
```
%ruby bin/split_moleculardata_each_dataset_from_humandb_both.json.rb json_from_joomla/humandb_20231223_both.json |grep hum0014 |jq -r '.…
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Hi,
```
version: v3.0.1
Files and parameters used:
-e 3000000000
-k 31
-o index/processed
-r chm13v2.0.fa
-t 10
-v merged.sorted.multi.vcf
Determine allele se…