jon-xu scSplit issues - Githubissues

jon-xu / scSplit

Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.

MIT License

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issues

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compare mixed samples together

#28 laurajaras opened 1 month ago
1
pandas "append" function for DataFrame object is deprecated

#27 G3N0M3 closed 7 months ago
2
Running time

#26 IBDgenomics closed 5 months ago
1
Reducing doublets using scSplit

#25 inbarsh2 closed 7 months ago
1
Issues with scsplit count

#24 yilevine closed 7 months ago
5
Load time error

#23 abmmki closed 2 years ago
3
Memory error with scSplit

#22 ahmadsam66 closed 2 years ago
3
Error during running the scSplit

#21 ahmadsam66 closed 2 years ago
1
run command error

#20 vjbaskar closed 2 years ago
2
Issue with scSplit count function...

#19 SathiyaNManivannan closed 2 years ago
3
Question: Bulk nanopore RNA-seq?

#18 alexandruioanvoda closed 2 years ago
1
Requirement for umi tools deduplication

#17 dn-ra closed 2 years ago
2
scSplit ends silently

#16 achernom closed 2 years ago
4
mouse SNPs recommendation

#15 SaraVilla closed 2 years ago
3
AttributeError: 'DataFrame' object has no attribute 'ix'

#14 bloodmutilomics closed 2 years ago
2
Memory error, which can be fixed

#13 VladimirShitov closed 3 years ago
1
Possibility to use for sc/snATAC-seq?

#12 HaglundA closed 3 years ago
1
Pileup error

#11 drneavin closed 4 years ago
1
syntax error scSplit count

#10 dwkarjosukarso closed 4 years ago
12
output to different directory

#9 drneavin closed 4 years ago
6
Error when getting genotypes

#8 drneavin closed 4 years ago
11
Problem building allele count matrices

#7 ccruizm closed 4 years ago
13
VCF from gatk

#6 yh154 closed 4 years ago
14
syntax error in scSplit count

#5 jagregory17 closed 4 years ago
3
Sample genotypes

#4 jon-xu closed 5 years ago
1
main.py ValueError: setting an array element with a sequence

#3 drneavin closed 5 years ago
7
TypeError: can only concatenate str (not "int") to str`

#2 Griffan closed 5 years ago
4
Python packages

#1 davetang closed 5 years ago
3