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Related to https://github.com/deepmind/alphafold/issues/280.
We are getting a disk write error after Jackhammer completes:
```
I0613 00:13:04.128991 139887425492800 utils.py:36] Started Jackhmm…
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Hi, I am trying to troubleshoot performance of hhblits on cluster and supercomputer resources at the ORNL OLCF. We are finding that the newest version is running really slowly despite moving databases…
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Hello everyone,
I am having a difficult time using RoseTTAfold as I am inexperienced with using HPC and more complex installation procedures. I am running into a few problems while running the soft…
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Dear hh-suite developers,
Thanks for creating such a wonderful tool.
We are trying to align 750,000 proteins sequences using hhblits on a compute cluster. However, we are having the storage random…
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Hi
I am using HHSuite 3 and I am trying to build a custom database.
When I run the ffindex_apply_mpi step, the *_a3m_wo_ss.ffdata file comes back with 0 lines - is this the expected output?
…
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I want to use hhblits to make a multiple sequence alignment using only eukaryote sequences. Is there a way to get only the eukaryote sequences from the uniclust database.
:exclamation: Make to chec…
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Hello everyone,
I installed the ProSPr Docker container.
When I try to run ProSPr on a sequence using the command:
`docker run -t -v /home/dante/data/:/data prospr/prospr -t --a3mfile /home/dant…
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Hi,
It seems that we have a directory issue, supposedly due to a missing file in exploratory mode. This problem might have shown up before in previous issue, but applying the suggested solution (wh…
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I'm trying to index a 6-frame translation of a genome to use it in a hhblits search, but I get a segmentation fault in ffindex_from_fasta. This might be due to the huge length of the sequences, as I h…
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I ran the following code:
First I ran the command to to build ffindex for my sequences kept in fasta file named as pgpb and then i ran command to generate MSA for each sequences:
mpirun -np 24 hhb…