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I am wondering if i can use the pipeline to detect bacterial infections in human illumina paired ended fastq files.
I assume i would use already host removed files and use these against ncbi bacteria…
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Suggestion (from Yury)
- Create time-dependent plot of vaccination rate
- could compare with ratio of deaths to infections
Question: where do we get the data from?
- one option: https://ourw…
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Hello,
I am testing the following set of parameters:
Currently Hospitalized COVID-19 Patients 69
Doubling time before social distancing (days) 4
Social distancing (% reduction in social conta…
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At the moment we show how to construct `EpiProblems` from individual submodels and we show how these can be simulated from/sampled individually. Do we want to think about functionality so that you can…
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The graph called "Frecvența după grupe de vârstă" would be more useful if divided in equal, more detailed, slices (say, 10 years each). In the current version, there is an artificial bump for the adul…
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We want to add a line to the graph for death to better relate the model to real life.
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Do you have a clear view of how hard it would be to support multiple sites of data at once here?
Looking at the model code it looks like doing something fairly simple where you assume the differen…
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### Summary
Mixed infections can cause difficulties when analysing wgs data. Improved support for mixed infection data as well as mutation phasing will be implemented.
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Nice calculator! It seems the label "case fatality rate" slider should be changed to be "infection fatality rate"? If you're going to use CFR, you would need an extra variable or two to specify what f…
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The Directorate of Health and The Department of Civil Protection and Emergency Management (Government of Iceland)
Meets our minimum requirements for sources. Provides:
1. Tests per day (timeseries…