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### Data Source
https://www.gisaid.org/
### Note
The GISAID Initiative, originally known as a Global Initiative on Sharing All Influenza Data, involves public-private-partnerships between the Ini…
Jiros updated
3 years ago
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This is a [nice paper](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0027631) from my old adviser that attempts to identify what host a virus can infect based on its genome using mu…
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Hi Alex,
Thanks for the great work on STARsolo, I'm definitely going to use it! :)
I'm working on an Influenza dataset so with very small and "unannotated" reference genome. Actually, there is o…
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A number of factors have made our HHS pipeline fragile in recent months. I made some WIP code to compare what our API had available compared to what was on the healthdata.gov site. Gonna post it here,…
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This is such an amazing work. I downloaded and read 《Dynamic Virtual Graph Significance Networks for Predicting Influenza》 on arXiv, and found the source code. The model proposed in the paper also gav…
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It's not clear to me if this should be considered a bug or user-error but at least wanted to document the behavior here.
If the reference tree for a Nextclade dataset does not pre-define the color…
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Fraser et al. (2009) Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings, report:
> Given estimates of $R_0$ and the current epidemic size $x$, we can estimate the number of genera…
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The current implementation of DP-3T assumes that there is only one epidemic. However, the DP-3T protocol could also be used for other high-infectious patheogens, for example influenza, measles or smal…
spixi updated
4 years ago
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Hello, in the process of checking internal templates, I came across errors that are also be present in the DataHarmonizer's data standards.
For your consideration,
1) Purpose of Sampling - "... s…
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**User story:** As an existing user of the covid pipeline I want to know what ReportStream's new capabilities are and how to upgrade my connection to receive them.
**What does done look like:**
✅ Q3 …