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epiverse-trace
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epichains
[Under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
https://epiverse-trace.github.io/epichains/
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Use "unreleased" development mode for pkgdown
#273
jamesmbaazam
closed
1 week ago
0
Remove missed pkgdown as_is = TRUE
#272
jamesmbaazam
closed
1 week ago
0
Bump JamesIves/github-pages-deploy-action from 4.6.1 to 4.6.3
#271
dependabot[bot]
closed
1 week ago
0
Clarify what `n_chains > 1` means in context of susceptible depletion vs `lapply()` over `simulate_chains()` with `n_chains > 1`
#270
jamesmbaazam
opened
2 weeks ago
0
Remove pkgdown config `as_is = TRUE`
#269
jamesmbaazam
closed
3 weeks ago
0
Update `CITATION.cff`
#266
github-actions[bot]
closed
1 month ago
0
Bump up dev version
#265
jamesmbaazam
closed
1 month ago
1
Fix codecov badge
#264
jamesmbaazam
closed
1 month ago
0
Update installation instructions
#263
jamesmbaazam
closed
1 month ago
0
pak caused installation error message
#262
avallecam
closed
1 month ago
1
Update `CITATION.cff`
#261
github-actions[bot]
closed
1 month ago
0
Release epichains v0.1.0
#260
jamesmbaazam
closed
1 month ago
2
Collapse the "Related Packages" section in the README
#259
jamesmbaazam
closed
1 month ago
0
Update `CITATION.cff`
#258
github-actions[bot]
closed
1 month ago
0
Update test coverage workflow to allow use of global codecov token
#257
jamesmbaazam
closed
1 month ago
1
Add Getting Started section on plotting with `{epicontacts}`
#256
jamesmbaazam
closed
1 month ago
8
Plotting with `{epicontacts}`
#255
jamesmbaazam
opened
1 month ago
0
Verify all images include helpful alt-text
#254
jamesmbaazam
opened
1 month ago
0
Rename files with `.r` extension to `.R`
#253
jamesmbaazam
closed
1 month ago
0
Remove nolint tags
#252
jamesmbaazam
closed
1 month ago
0
Add/update developer tools
#251
jamesmbaazam
closed
1 month ago
0
Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.1
#250
dependabot[bot]
closed
1 month ago
1
Update `CITATION.cff`
#249
github-actions[bot]
closed
1 month ago
0
Update workflows to match packagetemplate
#248
jamesmbaazam
closed
2 months ago
0
Release epichains 0.1.0
#247
jamesmbaazam
closed
1 month ago
3
Add architecture diagram
#246
jamesmbaazam
opened
2 months ago
0
`tf` should be `t0` in vignette on projecting incidence
#245
jamesmbaazam
closed
2 months ago
0
Make `likelihood()` an S3 generic
#244
jamesmbaazam
opened
2 months ago
1
Make chains stop at a hard limit using the `stat_*` argument
#243
jamesmbaazam
opened
2 months ago
0
Improve `simulate_*()` functions: Rename columns + improve object names + comments
#242
jamesmbaazam
closed
2 months ago
7
Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0
#241
dependabot[bot]
closed
2 months ago
0
Make `summary` find max of all values including `Inf` and print `>= stat_max` if max is `Inf`
#240
jamesmbaazam
closed
3 months ago
1
Should `summary()` report infinite outbreaks as max?
#239
sbfnk
closed
3 months ago
6
Column names switched in return value of `simulate_chains`
#238
sbfnk
closed
2 months ago
1
Clarify `stat_max`
#237
jamesmbaazam
closed
2 months ago
9
Improve function argument documentation
#236
jamesmbaazam
closed
3 months ago
1
Rename `simulate_summary()` to `simulate_chain_stats()` for clarity
#235
jamesmbaazam
closed
2 months ago
2
Improve Getting Started vignette
#234
jamesmbaazam
closed
3 months ago
3
Improve documentation of `nsim_obs` and `obs_prob`
#233
jamesmbaazam
closed
3 months ago
1
dependabot workflow: Fix "label" option
#232
jamesmbaazam
closed
3 months ago
0
Improve documentation of `nsim_obs` and `obs_prob` in `likelihood()`
#231
jamesmbaazam
closed
3 months ago
0
Expand on meaning of `infinite` in `borel` functions
#230
jamesmbaazam
closed
3 months ago
1
Bump JamesIves/github-pages-deploy-action from 4.1.4 to 4.5.0
#229
dependabot[bot]
closed
3 months ago
1
Bump actions/checkout from 3 to 4
#228
dependabot[bot]
closed
3 months ago
1
Fix dependabot workflow
#227
jamesmbaazam
closed
3 months ago
0
Add quick start example in README
#226
jamesmbaazam
closed
3 months ago
0
Make non-user facing functions internal
#225
jamesmbaazam
closed
3 months ago
1
Remove `rbinom_mean_disp()`
#224
jamesmbaazam
closed
4 months ago
0
Fix render-readme: use workflow from `{packagetemplate}`
#223
jamesmbaazam
closed
4 months ago
0
Use `checkmate` naming conventions for internal input checkers
#222
jamesmbaazam
opened
4 months ago
0
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