-
```
What steps will reproduce the problem?
1. Add the following to startup.m
addpath('C:\work\matlab\tools\nctoolbox\','-end')
setup_nctoolbox
2. Attempt to call ncgeodataset on a large thredds datas…
-
Would be nice to have a RIO reader/writer for HDT
-
**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.7
- OS name and version (`lsb_release -ds`): Ubuntu 20.04.1 LTS
**To Reproduce**
Exact bcbio command you have used:
```
bcb…
-
Hi!
W have added in our fork 3 more entities to the model.
Study ---n--> AssayGroup --n-->Metabolite --n--> MetaboliteSample.
Load and save into the database works fine....but unloading is not work…
-
I already raised an issue with Picard, which is similarly affected, and Bowtie2, which is the root cause of the problem.
https://github.com/broadinstitute/picard/issues/1764
https://github.com/BenLa…
-
womtool graph bug:
Exception in thread "main" java.util.NoSuchElementException: key not found: ScatterVariableNode(WomIdentifier(LocalName(lane),FullyQualifiedName(lane)),Plai…
-
Hi,
I have three questions that I am posting together.
1. Can you please give clear instructions about how I can build a Bio4J db for my reference sequences and incorporate them into my BG7 run?
2. C…
-
Hi,
I am trying to run the [PARpipe](https://github.com/ohlerlab/PARpipe) pipeline. It is dependent on bpipe. I run into the same error no matter how bpipe is called (whether within PARpipe, trying…
-
I have noticed that when running spark tools (e.g. CountReadsSpark or MarkDuplicatesSpark) that running with an input in the form "CountReadsSpark -I gs://my-bucket-dir/my-file.bam." The tool crashes …
-
As per the discussion in the community call today, I am hereby creating an "issue" to stimulate creation of a core expression data model so we can build tools that are commonly usable. (Note that Stra…