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Passing NaNs as weights will cause some functions to crash, see e.g. https://github.com/igraph/rigraph/issues/415
Functions which can't handle NaNs should check the weight vector for NaNs, and repo…
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Hi ,
The error occurred indicate that liger not found, when i run the liger method to integrated my scRNA-seq Data.
It was weird, because of i had installed the rliger and the library(rliger)…
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In our research group we have identified a problem in the LIME raytracer
causing the central pixel fluxes in a ~1/r^2 distribution to be overestimated.
For the same model with different pixel sizes …
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- download a data of choice from 10x genomics with `sc.datasets_visium_sge()` (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- run the scanpy tutorial,…
giovp updated
3 years ago
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I'm not sure what t-SNE implementation is currently used in scanpy, but would it make sense to switch it to openTSNE? It's a Cython re-implementation of FIt-SNE, it's available on conda and should be …
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Hello
I was wondering if it would be possible to obtain short documentation on how to generate and use different MCMICRO output files in Minerva Author (and possibly Minerva analysis) .
For example…
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Recently ran into an issue with the RunUMAP step of the [introductory vignette](https://satijalab.org/seurat/articles/pbmc3k_tutorial). When I execute "pbmc
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I'm starting to regularly analyze samples multiplexed with HTOs a la [Stoeckius et al](https://www.biorxiv.org/content/early/2017/12/21/237693) and multimodal CITE-seq ADTs. I have some rough ports o…
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Hi,
I'm trying out your tool because I want to replace the workflow in our lab that currently uses megaBLAST + CheckV's `anicalc`/`aniclust` to something faster. Based on your [tweet](https://twitt…
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Is it possible to simulate just the detector effects? And in a consistent way?
In particular, I'm experimenting one of the most simple pipelines we have to design for MICADO: the dark current pipel…