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welch-lab
/
liger
R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
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Loading a dataset generated with 'liger' using 'rliger'
#318
yesitsjess
opened
1 week ago
3
Error When Using `createLiger` with HDF5 File
#317
h4rvey-g
closed
2 weeks ago
2
I cannot find joint cluster result in liger object
#316
DruncBread
closed
1 week ago
2
How can I determine the similarity scores between clusters using Liger's UINMF?
#314
HaixJiang
closed
1 week ago
5
Error in ImputeKNN
#313
kangjiajinlong
opened
1 month ago
0
Error when performing the Wilcoxon test on the peak counts
#312
zhangyz1997
opened
2 months ago
1
Query on building shared factor neighborhood graph
#311
yuzhong1997
opened
2 months ago
2
no slot name "defaultCluster" for this object of class "liger"
#310
Obtusah
opened
3 months ago
1
invalid type "list" in R_matrix_as_sparse error
#309
Obtusah
closed
3 months ago
3
Error in `signal_stage()`
#308
KaiWaldrant
closed
3 months ago
4
Issue with loading old liger object via convertOldLiger function
#307
ellenbouchard
opened
4 months ago
3
merge
#306
mvfki
closed
4 months ago
0
Moving new documentation pages to welch-lab
#305
mvfki
closed
4 months ago
0
Back to "rliger"
#304
mvfki
closed
4 months ago
0
Collective updates
#303
mvfki
closed
4 months ago
0
Collective updates
#302
mvfki
closed
4 months ago
0
fixes
#301
mvfki
closed
4 months ago
0
collective updates
#300
mvfki
closed
4 months ago
0
Collective updates
#299
mvfki
closed
4 months ago
0
Dataset specificity plot
#298
yolcasmar
opened
5 months ago
0
How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'?
#297
wangmeijiao
opened
6 months ago
4
Error on makeFeatureMatrix
#296
minsu1794
closed
5 months ago
1
Release 1.0.1
#295
mvfki
closed
8 months ago
0
NaNs during `SelectGenes()`
#294
shaniAmare
closed
4 months ago
1
cran package archived
#293
nfancy
closed
8 months ago
6
Bug in Seurat's wrapper function
#292
soheilj
opened
8 months ago
1
Prepare for upcoming Seurat v5 release
#291
saketkc
closed
4 months ago
1
Problems with scaleNotCenter()
#290
wangzhenzZ
closed
4 months ago
2
Generate gene and promoter bed files
#289
ericzzhang01
opened
1 year ago
0
GitHub Actions Workflows
#288
mvfki
closed
1 year ago
0
New obj
#287
mvfki
closed
1 year ago
1
New obj
#286
mvfki
closed
1 year ago
0
New obj
#285
mvfki
closed
1 year ago
0
Add 15% of unit tests
#284
mvfki
closed
1 year ago
0
Merge Yichen's local update
#283
mvfki
closed
1 year ago
0
Another request for help regarding SCTransform
#282
cblazier
opened
1 year ago
1
log transform data first?
#281
jessegmeyerlab
closed
1 year ago
1
"shared factor neighborhood" not used anymore as described in the paper?
#280
ccshao
closed
1 year ago
3
Lowest suggested value for lambda?
#279
lucygarner
closed
8 months ago
1
problem with read10X and createLiger
#278
sdwien
closed
8 months ago
3
Integrating SCTransform-normalised data with LIGER
#277
lucygarner
opened
1 year ago
1
Subsetting integrated seurat object and reclustering using liger
#276
Prathyusha-konda
closed
8 months ago
1
plotgeneloadings, runGSEA, plotWordClouds error
#275
Prathyusha-konda
opened
1 year ago
0
Add option for Leiden algorithm
#274
samuel-marsh
closed
4 months ago
1
Unable to use unshared arguments using LIGER v1.0.0.0
#273
simeonhebrew
closed
1 year ago
1
mergeH5 function - error #000: ../../src/hdf5-1.12.1/src/H5L.c in H5Lexists(): line 943: unable to get link info
#272
lucygarner
closed
1 year ago
2
getProportionMito() is currently mouse-specific
#271
jowkar
closed
8 months ago
1
recovering expression for differential analysis
#270
Fclef
closed
8 months ago
6
Fixed non-conformable matrix bug in online_iNMF
#269
bnovotny
opened
1 year ago
0
How to split sample of function (plotByDatasetAndCluster)
#268
Jingle0814
closed
1 year ago
2
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