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- I've seen one example so far where samples with the exact same node placement have different clade/lineage assignments.
- The base tree in this example is public-latest (2022-04-17).
- The two hi…
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Hi,
I am going to be using CSUBST in an exploratory manner on a number of genes from a phylogeny and I have both a species tree and gene trees (for each gene) available to me. Can you recommend the…
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So I've tried a stock Lineage 15.1 build and an eelo OS 15.1 (basically reskinned Lineage) build using these trees, and both times Verizon's mobile data seems to be broken. I've seen it work, but for…
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Hello,
Is there some way to track in which branch of the tree/lineage a given recombination break (given in -b or -f output files) occurs?
I ask because I am specifically interested in identifyi…
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**Description**
**Sub-lineage of:** KP.3.1.1
**Earliest sequence:** 2024-6-2, Spain – EPI_ISL_19225587
**Most recent sequence:** 2024-8-2, USA, New York – EPI_ISL_19341409
**Continents circulating…
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It builds fine without the GMS env variable. This is not with docker, this is under Ubuntu 22.04.
```
(.lineage_venv) administrator@Android-VM:~/android/lineage$ m -j8 bacon
=====================…
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Given a query chronogram (can be any chronogram from otol –output from EstimateDates, a dated bold tree, or a chronogram given by the user) with missing taxa:
If missing taxon is just one lineage:
…
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This issue is created to track the progress of the porting halium and ubuntu touch to motorola e 13
kernel source: https://github.com/MotorolaMobilityLLC/kernel-sprd/tree/MMI-TLA33.105-226-2
devi…
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Can I extract the underlying decision-rules (or 'decision paths') from a trained tree in a decision tree -
as a textual list ? something like: "if A>0.4 then if B0.8 then class='X' etc...
```
fr…
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At the moment, the code that imputes Pango lineages for non-sample nodes is in a [notebook](https://github.com/jeromekelleher/sc2ts/blob/main/notebooks/lineage-imputation.ipynb). However, some of the …