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I tried to parse .bib files exported from scopus today but ended up with a total mess of column names (see below).
``` r
bib_string No coercion to numeric applied.
#> # A tibble: …
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## Expected Behavior
I expected to run an alignment with `mmseqs search` and then convert the alignment into a custom tabular format with `mmseqs convertalis`.
## Current Behavior
Running `mm…
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I get the following error:
+++ NOW PROCESSING Read alignment to reference genome
[system] bowtie2-build -q ./data/reference.fasta ./02_reference_alignment/reference
[system] bowtie2 -t -p 20 -L…
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Lims Issue
---------------
**Work Flow:** CG001 - Genotyping
**Protocol:** CG002 - Genotyping
**Step:** CG002 - Plate Setup MAF
**Description:** We would like to to modify the calculations of…
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Hi,
I met some issue when I tried to install your package. I tried to use source, but I met another issues.
Thanks for your help!
R version 3.6.0 (2019-04-26)
install_github("lmc297/bactaxR")…
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Hi,
I'm interested in using DALEX in a university project regarding interoperable ML in the context of microbial genomics. I prepared a taster dataset in order test out a very basic pipeline for us…
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I downloaded breseq-0.35.0-Linux-x86_64.tar.gz and ran ./run_test.sh. The test failed with breseq saying it could not open tests/lambda_mult_ref_read/../data/lambda/empty.fastq for reading. It looks …
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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Hi Derrick,
I tried classifying my sample reads with kraken database containing only "nt" sequences and found that all my reads were classified at the root. Here is the output from the first few li…
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re: https://github.com/openjournals/joss-reviews/issues/2119
grammar
=======
+ problems with sentence: `This can be calculated intersecting (with bedtools,`
+ "regions between used defined" shou…