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Use these papers:
Sci Transl Med. 2014 Jul 30;6(247):247ra103. doi: 10.1126/scitranslmed.3008490.
ASC-1, PAT2, and P2RX5 are cell surface markers for white, beige, and brown adipocytes.
Ussar S1, Lee…
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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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**What is the SO term name and accession?**
gRNA_gene (SO:0001264)
**Describe what you would like to change.**
Current def is "A noncoding RNA that guides the insertion or deletion of uridine res…
sjm41 updated
2 years ago
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Hello
Does pipeline work with paired-end data? Or only SE?
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cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC @sinanugur @Bastami @haebhardt
Let's discuss `Variant` attribute that will give the informatio…
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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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Hi All,
I'm running mirnovo stand alone:
perl mirnovo.pl -i /raid/projects/scratch/BioTrans/Pdensiflora/miRNA/reformat_to_phred64/QA/fa/Bud_Tree_C64.clipped.fa.gz -g NA --disable-genome -t unive…
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This full-size workflow test case should use huge, real-life test files.
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Dear Jiang Li,
Thank you for developing nice pipeline! I think your pipeline is very useful.
I wonder if you could help me understand the count data from Annotation module.
What is the unit of…
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Hello,
I got the result and I have a question. So, from this program, I can get the miRNA which is predicted to bind the mRNA based on the log fold change of genes. The output file is a CSV file of mi…