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nf-core
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smrnaseq
A small-RNA sequencing analysis pipeline
https://nf-co.re/smrnaseq
MIT License
74
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125
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CSVTK join too slow for large projects
#484
apeltzer
opened
3 days ago
3
fix space in usage.md
#483
atrigila
closed
1 week ago
1
Add docs mirtop
#482
atrigila
closed
1 week ago
1
Issue 477
#481
nschcolnicov
closed
1 week ago
4
Cant run pipeline with newer nextflow version
#480
nschcolnicov
closed
1 day ago
1
Fix igenomes_base in nextflow_schema
#479
nschcolnicov
closed
1 month ago
7
remove value from schema
#478
nschcolnicov
closed
1 month ago
2
MIRTOP_STATS IndexError
#477
anastasiaprime
closed
1 week ago
4
Tiny bugfixes
#476
apeltzer
closed
1 month ago
1
Paired-end data?
#475
anastasiaprime
closed
1 month ago
4
Important! Template update for nf-core/tools v3.0.2
#474
nf-core-bot
closed
1 month ago
2
Important! Template update for nf-core/tools v3.0.1
#473
nf-core-bot
closed
1 month ago
1
Template update 3.0.1
#472
nschcolnicov
closed
1 month ago
8
Important! Template update for nf-core/tools v3.0.0
#471
nf-core-bot
closed
1 month ago
2
Change to `=` assignment, see above
#470
apeltzer
closed
1 month ago
0
Adress issues from review
#469
apeltzer
closed
1 month ago
10
Make citation tools dependent on whether tool was executed
#468
apeltzer
closed
1 month ago
1
Validate parameters centrally via utility functions
#467
apeltzer
closed
1 month ago
0
Date + Bump version
#466
apeltzer
closed
1 month ago
1
Add licences to bin scripts
#465
apeltzer
closed
1 month ago
0
Add licences and authorship information
#464
apeltzer
closed
1 month ago
3
Update-software-modules & xchangelog
#463
apeltzer
closed
1 month ago
1
Fix wrapping in fasta files
#462
atrigila
closed
1 month ago
1
Update usage.md
#461
nschcolnicov
closed
1 month ago
1
Review pipeline release checklist
#460
atrigila
closed
1 month ago
5
Update modules and subworkflows, fix linting
#459
atrigila
closed
1 month ago
1
Fix linting
#458
atrigila
closed
1 month ago
1
Reorganize `clean fasta` code
#457
atrigila
closed
1 month ago
1
Removed unused protocol argument and updated docs
#456
nschcolnicov
closed
1 month ago
1
Reorganize `CLEAN_FASTA` function
#455
atrigila
closed
1 month ago
1
Fix test edgeR
#454
atrigila
closed
1 month ago
1
pipeline fails at same step each time
#453
lo-schwartz
opened
1 month ago
4
Removed untar, updated bowtie_channel
#452
nschcolnicov
closed
1 month ago
1
standardize ch_bowtie_index channel structure
#451
nschcolnicov
closed
1 month ago
0
edger_qc module nf-test is trying to check for undeterministic files and it fails
#450
nschcolnicov
closed
1 month ago
2
Replace untarfiles with untar
#449
nschcolnicov
closed
1 month ago
1
Add nf-core `mirdeep2` and a test case
#448
atrigila
closed
1 month ago
1
General cleanup
#447
nschcolnicov
closed
1 month ago
5
PR for Release 2.4.0
#446
apeltzer
closed
1 month ago
2
Add some more credits
#445
apeltzer
closed
1 month ago
1
Migrate bowtie
#444
nschcolnicov
closed
1 month ago
2
Add nf-core `mirdeep` to smrnaseq
#443
atrigila
closed
1 month ago
0
Added info about read number behavior
#442
nschcolnicov
closed
1 month ago
1
Migrate to nf-core `bowtie align` in contaminant filter
#441
atrigila
closed
1 month ago
1
Analysis of Paired-end reads
#440
oliverdesousa
closed
1 month ago
1
Fix paired end sample handling
#439
nschcolnicov
closed
1 month ago
2
Update `mirtop`, process samples independently and join results
#438
atrigila
closed
2 months ago
1
Update `mirtop` to latest version
#437
atrigila
closed
2 months ago
0
Add nf-core `bowtie align` to smrnaseq
#436
atrigila
closed
1 month ago
1
Migrate to nf-core `bowtie build`
#435
atrigila
closed
2 months ago
1
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