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cougarlj
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COMPSRA
COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
https://regepi.bwh.harvard.edu/circurna/
GNU General Public License v3.0
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Question regarding circBase search by COMPSRA
#58
zntaylgit
opened
1 month ago
3
Downloading files from https://regepi.bwh.harvard.edu/circurna/bundle_v1/db/nt
#57
brianherb
opened
6 months ago
1
Read error in qc pipe command line
#56
Nick2023S
opened
8 months ago
1
-mbi flag to index genome without input files?
#55
pseudacriscrucifer
closed
10 months ago
1
prebuilt database error in annotation module
#54
pseudacriscrucifer
closed
11 months ago
1
version 1.0.3 - STAR failing to uncompress
#53
pseudacriscrucifer
closed
11 months ago
0
How to extract length of sequences?
#52
kenminsoo
opened
1 year ago
2
Fail to find the prebuilt database obj file
#51
kengjunglee
opened
1 year ago
1
database snoRNA
#50
vetmohit89
opened
1 year ago
1
STAR
#49
vetmohit89
opened
1 year ago
6
Output of non-annotated reads
#48
genericname2
opened
1 year ago
1
COMPSRA 2.0
#47
genericname2
opened
1 year ago
6
piRbase_mm10.obj related
#46
alberttai
opened
1 year ago
6
Annotation module error
#45
Ben7124
closed
1 year ago
1
Zip file still has COMPSRA V1.0.2
#44
Ben7124
closed
1 year ago
1
Show sequence in annotation file
#43
genericname2
closed
1 year ago
2
QC Module returns 0 FitReads
#42
genericname2
closed
2 years ago
2
Including a new circRNA database
#41
ImmunoOncology
opened
2 years ago
3
zcat does not work in MacOS as intended
#40
edfajardo
opened
2 years ago
7
STAR was not installed correctly!
#39
avinash-ngc
opened
2 years ago
3
Issue during alignment/installation
#38
jackbrougher
closed
2 years ago
2
SAMAnnotator - null
#37
Stakaitis
closed
1 year ago
1
No annotated items in example case
#36
ntbeileh
opened
2 years ago
5
What dose the InCluster mean in the annotation file of pirna
#35
liangwx332
closed
2 years ago
6
Fail to find the prebuilt database obj file! (But it is there!)
#34
raquelgarza
opened
2 years ago
5
Change path to bundle_v1?
#33
asherkhb
opened
2 years ago
4
Missing genomeParameters.txt in the Alginment module
#32
obalasz
opened
2 years ago
4
Hyphens seem to cause issues when running alignment (STAR) step
#31
SergeWielhouwer
opened
2 years ago
4
issue in file merge
#30
hafizmtalha
opened
2 years ago
15
Fastq File Error: Fail to get read!
#29
hafizmtalha
opened
2 years ago
1
Fail to find the prebuilt database obj file!
#28
hafizmtalha
opened
2 years ago
2
Genome_index_file
#27
tkaraman19
opened
2 years ago
1
rlh parameter
#26
Ben7124
closed
2 years ago
1
Running Microbe Module
#25
84AP
opened
2 years ago
5
Changing the star alignment parameters
#24
yaxuwang
opened
2 years ago
6
error in annotation
#23
mars188
closed
2 years ago
5
Custom STAR indices
#22
riccardo-aiese
closed
2 years ago
3
Annotation files numbers not matching Annotation report
#21
yangtkc
opened
3 years ago
1
STAR removed most of the reads as short
#20
sagarutturkar
opened
3 years ago
3
What is the unit of count data from Annotation module?
#19
yuzymatsuo
opened
3 years ago
5
Paired end reads
#18
Reksome
opened
3 years ago
4
issue in function module
#17
sayamsmr
opened
3 years ago
1
Error opening file and FileNotFound
#16
DAE-113
opened
3 years ago
4
piRBase_mm10.obj
#15
sith15
closed
3 years ago
1
Not in GZIP format error in Annotation module
#14
Ben7124
closed
3 years ago
1
STAR hg38 Files
#13
brad-horn
opened
3 years ago
1
Annotation module - Error: local class incompatible: stream classdesc serialVersionUID
#12
Paula-V-IPT
opened
3 years ago
13
Annotation error for mm10 based run
#11
Hironobu-Murakami
closed
3 years ago
10
Annotation error for hg19 based run
#10
drumair
closed
3 years ago
3
Problem with alignment using hg19
#9
drumair
closed
3 years ago
4
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