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Currently the OMSSA, xTandem and MascotAdapterOnline adapters will fail with an invalid file type error if an MGF file is passed in via the input line.
OMSSA and xTandem native have the capability…
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I recently encoutered an UTF-16 (LE) encoded fasta file that leads to a crash of DecoyDatabase (in SeqAn fasta reader).
the ff fe indicates the UTF-16 encoding and byte order:
```
hexdump -C trun…
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* My operating system: Windows 10
* My JDK: jdk-13.0.1
* My JRE: jre-1.8.0_231
I am attempting to build and run MZmine 3 (current git) using Eclipse for the first time. I followed the instructi…
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Hi @c-ruttkies , @sneumann
Is there a command line option to metfrag where I can set the ElementInclusionFilter as I can when using the online version (with MetFragWeb) ?
It does not work using …
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Greetings,
I am trying to build the html documentation and this is what I get:
Running Sphinx v1.8.4
making output directory...
building [mo]: targets for 0 po files that are out of date
buil…
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Right now, mzml files need to be present locally, and can eventually be zipped or gztarred. Using [PyFilesystem](http://docs.pyfilesystem.org/en/latest/) however would provide a unique interface to ac…
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I'm trying to follow the plotting a chromatogram example script from the latest docs.
The script is failing when adding attributes to Factory().new_plot()
```
pf.add(
run['TIC'].pe…
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## Overview
Since the current build can take up to more than an hour, it would be preferable to have more fine-grained tests to use with mzml2isa. While we want to ensure compatibility with MetaboLig…
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Hello,
I am trying to create a workflow to quantitate Waters UHPLC/MS .raw files automatically in a KNIME workflow. (Working with LCMS metabolite quantitation, specifically for drug metabolites in …
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I have the following problem: in `xcms` I have the `XCMSnExp` object that extends the `OnDiskMSnExp` object. Now we have the `Hdf5MSnExp`, which also extends the `OnDiskMSnExp`. The hdf5 functionality…