ISA-tools mzml2isa issues

ISA-tools / mzml2isa

Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

GNU General Public License v3.0

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issues

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Uninformative stacktrace from extract_assay_parameters()

#51 sneumann opened 2 months ago
0
Can't install latest version

#50 terazus closed 1 year ago
0
[1.1.0] - import mzml2isa - ValueError: could not find `owl:Ontology` element

#49 DrYak closed 1 year ago
3
Update `pronto` and drop Python 2 compatibility layer

#48 althonos closed 1 year ago
2
add support for Python 3.10

#47 proccaserra closed 1 year ago
6
allowing higher versions of openpyxl (needed if using Pandas 1.3.4 an…

#46 proccaserra closed 2 years ago
4
High memory consumption

#45 sneumann opened 3 years ago
2
Memora leak ?

#44 sneumann closed 3 years ago
4
Pyinstaller fix

#43 Tomnl closed 4 years ago
0
v1.0.3 (entry point fix)

#42 Tomnl closed 4 years ago
0
Parameter Value[Data file content]" should appear at most 1 time(s)

#41 sneumann opened 4 years ago
0
fixing templates to clear testing issues, see issue #39

#40 proccaserra closed 4 years ago
0
change ' Raw data file checksum type' to 'Data file checksum type'

#39 proccaserra closed 4 years ago
3
Update documentation

#38 Tomnl opened 4 years ago
0
Refactoring of the mzML / imzML parser

#37 althonos closed 5 years ago
5
KeyError: 'Spectrum representation' when using imzml files

#36 khaug closed 5 years ago
3
example data and unit test added

#35 Tomnl closed 5 years ago
1
Simple unit test and example data

#34 Tomnl closed 5 years ago
2
Plattform missing for multiple Assays

#33 sneumann closed 6 years ago
4
No license available

#32 pcm32 closed 5 years ago
3
Additional useful parameters

#31 Tomnl opened 6 years ago
0
mzML2isa fails on MTBLS 433 (cannot find `softwareRef`)

#30 althonos opened 7 years ago
0
"Unknown" scan polarity prevents assay files from being created

#29 khaug opened 7 years ago
2
Platform fix

#28 Tomnl closed 7 years ago
1
Second a_assay is missing instrument

#27 sneumann closed 7 years ago
3
New option to allow more control of the out folder

#26 Tomnl closed 7 years ago
0
More flexible out folder option

#25 Tomnl closed 7 years ago
1
Consider using -o OUT_PATH as-is

#24 sneumann closed 7 years ago
3
Low memory XML decoding (parsing scans iteratively)

#23 lomereiter opened 7 years ago
6
Profile centroid fix

#22 Tomnl closed 7 years ago
0
[imzml] KeyError: 'Spectrum Representation'

#21 lomereiter closed 7 years ago
7
Update of imzML investigation template

#20 Tomnl closed 7 years ago
0
Windows test

#19 Tomnl closed 7 years ago
0
Write unittests

#18 althonos closed 5 years ago
3
Windows test

#17 Tomnl closed 7 years ago
1
updated appveyor to include new mzml2isa commandline usage

#16 Tomnl closed 7 years ago
1
Failing on Windows Python 2.7

#15 Tomnl closed 7 years ago
4
Use PyFilesystem to support importing from different origins

#14 althonos closed 5 years ago
1
Use a TargetedCollector to build the tree

#13 althonos opened 7 years ago
0
Acknowledge changes: dev-althonos

#12 althonos closed 7 years ago
0
Appveyor

#11 Tomnl closed 7 years ago
5
Appveyor

#10 Tomnl closed 7 years ago
0
Remove large files in git history

#9 Tomnl opened 7 years ago
1
Windows testing (AppVeyor)

#8 Tomnl closed 7 years ago
2
Non-trivial study setups

#7 althonos opened 7 years ago
4
lxml in windows (pip install)

#6 althonos closed 7 years ago
8
Missing unitCvRef in cvParam with units cause crash

#5 althonos opened 7 years ago
0
Multiple instrument configuration mismatch

#4 althonos opened 7 years ago
0
Remove m/z range and time range of imzML meta

#3 althonos opened 7 years ago
0
Merging changes from Martin's (althonos) repo to Tom's (tomnl)

#2 Tomnl closed 7 years ago
8