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Dear SLS ToolBox Team,
I encountered an error. Do you know how to solve it?
Failed 'Lesion segmentation tool'
Undefined function 'save_untouch_nii' for input arguments of type 'struct'.
In fi…
wulms updated
2 years ago
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Hello,
recently I tried to add some clinical CTs from hosipitals into KiTS. However I noticed KiTS nii fomat shape be like (num_slices, height, width) , which can be described as (z, x ,y) and orig…
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If bids-standard/bids-specification#424 is merged, then there will be an entity that delineates magnitude/phase in the specification. There already is one that delineates multi-echo data (echo). The…
tsalo updated
4 weeks ago
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**Describe the bug**
I am trying create and run my own `prostate_mri_lesion_seg_app`. For this, I am using data from the QIN-Prostate-Repeatability collection. I've modified the `app.py` file to corr…
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### What went wrong?
I am trying to clone my dataset ([ds005250](https://openneuro.org/datasets/ds005250)) with datalad. When trying to `datalad get` certain files, I get the following error:
``…
tsalo updated
1 month ago
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### What happened?
Dear all, I am trying to use MouseIn templates to get a brain mask on BL6 mouse, and I got the following error.
### What command did you use?
```shell
input_files = ['path…
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Hi,
Thank you for posting the algorithms about the motion correction.
I noticed that there is "seg_sa_{i:02d}-{num_slices:02d}.nii.gz" corresponding to each"sa_{i:02d}-{num_slices:02d}.nii.gz".…
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## Description
I needed to use `sct_register_multimodal -identity 1 -x nn` to put segmentation masks in the same orientation/space as my images and I noticed that the function was changing the type…
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If you have two nifti files with the same name in a folder but one is gzipped and the other isn't, when you load the gziped file slicer will instead load the data from the uncompressed file.
**This…
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While working on PR #1188 I noticed that even if all images of a session are deleted for a modality the folder specific for the modality is still kept. As an example, for the ADNI subject 002_S_1261 :…