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In `haps2dos4` lines 237-248, the fam file is processed to force all phenotypes to 1 or 2. The reason for this is unclear, but regardless this altered phenotype is propagated through the remainder of …
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Hi Joelle!
I am also running a gene-based test and this error keeps on appearing. I took the reference of the previous similar question and in my case the two files have exact the same format. Bu…
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I'm trying to compare these two diseases to find the differing phenotypes. This is surprisingly hard to do in our system.
https://monarchinitiative.org/disease/OMIM:227650#phenotypes
https://monarc…
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When installing the module I see the following errors:
```
$ drush en rawpheno
The following extensions will be enabled: rawpheno
Do you really want to continue? (y/n): y
CRITICAL (RAW PHENOTYPES…
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Hello,i an sorry to bother you.I have 9 phenotypes data during GAPIT for GWAS analysis.But during the process of performing the analysis,it should just associate the phenotypes of the first PH and the…
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## Easy
- [ ] CURIE or CURIE prefix absolutely needs to be part of the autocomplete box otherwise apparent duplicates are confusing. We are currently not getting that distinction until after selection…
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URI's for GO Phenotypes do not resolve, @nlwashington is this intentional or a bug?
For example:
http://purl.obolibrary.org/obo/GO_0016049PHENOTYPE on http://beta.monarchinitiative.org/phenotype/GO:0…
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It would be great if we could widgetize this for use in other systems. We also need a name for this tool.
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There are a variety of reasons for which grouping phenotypes is tricky, but right now it rally needs some serious love. We just have rows and rows of phenotypes with no indication of:
- [ ] which are…
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1. Loss of the Wee1 and Mik1 kinases, which catalyze Y15 phosphorylation, leads to mitotic catastrophe, in which cells enter mitosis at an inviably small size (Lundgren et al. 1991).
2. Cig2/CDK …