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I'm working on some Plasmodium falciparum callsets in GATK and I have come across a curious error:
```
Using GATK wrapper script /juffowup/gatk/build/install/gatk/bin/gatk
Running:
/juffowup…
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While finalising the nature of Sue Charman's contribution I noticed that we are not currently mentioning the metID work that was done originally (report is [here](https://github.com/OpenSourceMalaria/…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Would it be possible to have a taxonmically meaningful summary instead of the "... plenty of things!" output for reports containing many interactions?
In my eyes this could be a feature that improved…
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https://github.com/DEploid-dev/DEploid/issues/363
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We will assert that in instances of complex infection, one infection becomes the founding dominant infection while the remaining infections are co-incident and inhibited relative to their predicted in…
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MAR04280 (pyruvate[m] + NADH[m] lactate[m] + NAD+[m]) should be removed, because [having any significant amount of LDH activity in the mitochondrial matrix would rapidly dissipate the mitochondrial m…
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A good starting point is Pfam_SARS. I reviewed it a few weeks ago, and IIRC it has pretty good coverage of Betacov genes, but doesn't include some of the genes towards the 3' end found in other genera…
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Darren Creek and his lab have carried out metabolomics work on several OSM compounds (see #469 for background). Darren constructed a powerpoint of the results (below) and provided the following commen…
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As GSLP Operational Lead (Anna) responsible for the operation of the GBS pipeline we would like the ability to fail wells in the "SWGA Stock" and/ or in the "GBS PCR 1" plate similar to the Heron 384 …