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I primarily work with nucleotide sequences in DNA format, but am considering expanding functionality to proteins. However, I also want to maintain simplicity as this is why this package was designed i…
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I have a stupid question to ask, about this sentence "**_In the paper we define a hotspot as a residue on the target protein which is within 10A Cbeta distance of the binder_**".
I am working on se…
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**Describe the feature**
Following, a code allowing to make a t-test by grouping all the specific peptides (we forget the shared ones).
However, the code is currently not very generic (only works fo…
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src/design_patterns
* [ ] Add missing. We're missing a lot common patterns: Prioritize any that are also used on annotation. ~1hr, 2-3 people
- metabolism
- catabolism
- biosynthe…
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**Youtube**
- [x] [AlphaFold2, OpenFold, Protein Language Models and Beyond | Nazim Bouatta](https://www.youtube.com/watch?v=ON1ltprZKPo) from Molecular Modeling and Drug Discovery (M2D2) 2022
- […
kntkb updated
10 months ago
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Hi,
I successfully ran the finetuning code using config/pretrain/saprot.py and config/Thermostability/saprot.py
Then I newly got these questions
I would really appreciate it if you could answer…
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Some functionality which is unlikely to be commonly needed, but is certainly not overly difficult to add/maintain are reference data sets/lookups such as: 1) various FASTQ quality encodings, and 2) DN…
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## Type: Bug Report
## URL: https://ui.ci.transltr.io/results?l=Bethlem%20Myopathy&i=MONDO:0008029&t=0&q=1fb6945c-668b-4750-85f4-2daa53eb4596
## ARS PK: 98ca4253-5d0e-4741-9ace-0e051a37c0c7
## Steps…
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**Submitting author:** @degiacom (Matteo Degiacomi)
**Repository:** https://github.com/CCPBioSim/BioSim-analysis-workshop
**Branch with paper.md** (empty if default branch):
**Version:** v1.0
**Edito…
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Create lab booklet with the following sections:
- [ ] Prologue
- [x] Micropippet Evaluation
- [x] Human Tissue Cell Culture
- [x] The Hemocytometer & Cell Culture Math
- [x] Cell Staining and Microsc…