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The current msp and other spectral library formats only capture the metadata around each entry in the library (cluster, consensus spectra, peptides, small molecules), but not the way the spectral libr…
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Hello,
I have done docking between a ligand and a receptor using AutoDock vina. In the final output (_out.pdbqt), I realized there is an atom G (which does not exist in the original ligand file. In t…
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@bio4j/bio-people @pablopareja is starting to work on this, and it'd be good to have some ideas as a starting point. I think that we should start with something based on one of the basic existing [D3 …
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This goes later for sure, as it gets complicated/messy
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When annotation extensions are comma delimited and are from GO_CC, CL and an anatomy ontology then the model should indicate GO_CCpart_ofCLpart_ofanatomy.
MGI | MGI:1336882 | acts_upstream_of_or_…
ukemi updated
4 years ago
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Hi, is there an example file available that includes gaussian objects, i.e. `_ihm_gaussian_obj_site`?
arose updated
5 years ago
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Hi,
I started to use RSEM, and I am happy with what it can do!
I would like to use it further, to be able to pick the most abundant isoform of each gene, therefore wanted to try `rsem-calculate-ex…
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Hi,
I find it useful if one can choose different colors for the features in the plasmid map.
Currently , if you label a Sequence as a promotor this part is then green.
Maybe best is if you can cho…
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Hello. I am very glad to know about this package.
I am working on a way to represent peptide coverage over a protein sequence (i. e. represent peptides identified by MS over the whole protein). I t…