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rowname is missing from the dds object, resulting in downstream GO analysis fail.
I trace the bug to the function __DESeqDataSetFromMatrix__ but got lost there.
I suspect this has to something to…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Fjeanneret/multiSight
Confirm the following by ed…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ppdragondw/Key2Enrich
Confirm the following by ed…
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Hi Marc,
I am getting an error when running `spotlight_deconvolution()` with your example dataset. More info:
```
[1] "Preparing Gene set"
[1] "Normalizing count matrix"
[1] "Seeding initial …
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I'm trying to create a `.maf` object by using `annovarToMaf`. This is the code I'm using:
```r
files = list.files("results/ANNOVAR", full.names = TRUE)
annovar_maf = annovarToMaf(annovar = file…
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**Attach your log [file**]
[ArchR-addMotifAnnotations-1ae2429e816fd-Date-2020-11-30_Time-21-18-52.log](https://github.com/GreenleafLab/ArchR/files/5618553/ArchR-addMotifAnnotations-1ae2429e816fd-Date…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/seoanezonjic/ExpHunterSuite
Confirm the following…
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Hi, thanks for developing such great software.
I currently use a single cell experiment object to set up the trajectory inference using slingshot. I have got 6 lineages and then I would use slingPseu…
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I wanted to make sure we were on exactly the same page, so I have done the following:
1. directly cloned the github repo onto my laptop using Rstudio (previously I had simply downloaded a zip and wor…