-
Request that add some @amandamok's simulated ribosome profiling data into RiboViz as another vignette. This should provide ideal testing that reads are correctly aligned and of codon-level and gene-le…
-
MP:0002619 abnormal lymphocyte morphology
immunoblast abnormalities
immunoblast structural abnormalities
Similar for children as appropriate (MP:0000717, MP:0002401)
Unless you consider lympho…
-
I have been wondering about the scope of
fungal-type cell wall biogenesis (GO:0009272)
Definition
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, a…
-
Hi Weeks lab,
I am trying to snapshot whole transcriptome dms-mapseq data by mapping to a highly expressed transcript in our controls. We are getting extremely low - to almost 0% - alignment using…
-
VADR produces features with the `/exception` qualifier, to specify ribosomal slippage:
```
>Feature NODE_1_length_19663_cov_257.252269
-
I've found this scenario following [a discussion with @Connoropolous](https://github.com/holochain/holochain/pull/749) about validation related to private entries.
1. Alice commits a private profil…
-
Most/all published ribosome profiling data is held on the [Gene Expression Omnibus](https://www.ncbi.nlm.nih.gov/geo/) and [European Nucleotide Archive](https://www.ebi.ac.uk/ena) repositories. It cou…
-
We discussed this at the F2F workshop but I don't see any issue created.
I don't have the meeting notes handy, but the general idea was to have biological material entities divided into disjoint ch…
-
I know most programs will buffer the writing of trajectories, so that writing is less frequent. Is this something OpenMM does automatically? Or, will we need to implement something? I noticed a huge…
-
Currently reviewing 'phenotypic similarity evidence' branch and creating this ticket to document discussions and notes.
James
[phenotypic similarity evidence.docx](https://github.com/evidenceont…