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Hi openFAST dev. Team,
I have a question related to tower system ID analysis. We are trying to validate the tower model in openFAST of an offshore turbine against a commercial code BLADED.
For t…
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It looks like Arriba is missing most of the time most of IGH fusions.
For example, it is very well known in published scientific literature that MUTZ-5 cancer cell line harbors IGH-CRLF2 fusion, as…
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Tracking the support issue from May 21 where an author sees 98 new publications, some of which appear to be duped.
Justin Littman and I looked at the support issue this morning for a couple hours, an…
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Hi, When I use hicPlotMatrix to draw a heatmap with cool file as input, it reports an error that cool file is not an HDF5 file.
The command is like this:
```
hicPlotMatrix --perChromosome --matrix…
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**Description of the task:**
As a data wrangler I need to ensure the existing datasets are valid with the ingest graph validator to ensure correct data is available in the DCP2 MVP.
This tas…
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Hi there, thanks for making this great tool. It's quite easy to use and I can see it getting adopted widely in the field.
I have managed to run my individual seurat objects without any issues.
…
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while looking into #1159, I noticed that these three nodes in KG2.3.4 have the name "LAP", but the first item in their `synonym` fields is TGFB_, which seemed slightly odd. then I noticed that if you …
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LINX outputs a number of interesting-looking TSV files. What's the purpose of each one and how should users interpret them correctly? Can there be a section of advice for each one in the user guide? A…
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Could it take as input a GRIDSS somatic VCF file for the same patient to increase the specificity of fusion detection? A bit like internal consistency and PURPLE.
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I'm seeing an issue related to encoding pop up in the bcbio unit tests, when running inside the Docker images on Quay.
Here's a reproducible example:
```sh
image="quay.io/bcbio/bcbio-rnaseq:1.2…