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Say I get a signature w/o knowing the underlying genome, how do I determine which scaling factor was used? Ie it says `n: 0` in the metadata, but how to determine if eg `--scaled 1000` or `--scaled 10…
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`git log --oneline v3.3.1..master` shows:
Major new features:
* enable seamless loading of signatures from indexed databases (#1059, #1083, #1090)
* add `signature cat` and `signature split` comm…
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In Results section [Metagenome sketches can be accurately decomposed into constituent genomes by a greedy algorithm, 'gather'](https://github.com/dib-lab/2020-paper-sourmash-gather/blob/e4b195539946e1…
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Sometimes we recommend `--scaled 1` for exploration, but that can be dangerous. Internally the MinHash sketch is implemented as a sorted vector. They are good when operating on already calculated MinH…
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I recently changed my snakemake workflow to sourmash version 3.2.3. In doing so, I noticed that a gather run decreased in the number of species it reported for a specific signature from 41 to 38. Give…
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I have some protein signatures with `protein`, `dayhoff`, and `hp` moltypes. In running compare on the `protein` sigs, I get the following error:
```
$ sourmash compare --protein --no-dna --no-day…
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Hi!
I was evaluating sourmash as a fast option to create signatures from the full k-mer set of single protein sequences. [According to the documentation](https://sourmash.readthedocs.io/en/latest/a…
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Results of a brief chat with @luizirber, my version:
sourmash 3.0 will be the first release of an oxidized sourmash (i.e. conversion from C++ to Rust). This can happen soon (I think we're mostly wa…
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Hello,
I study maize genetics and am interested in Shasta for speeding up our genome assembly pipeline. An initial test run of Shasta with 40-45x coverage of nanopore reads with an N50 of ~30kb r…
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hello again,
apologies if this has been written somewhere, but may I ask what the proper steps are to update the sbt (and lca) databases? this is what I did, which may be completely wrong --
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