chanzuckerberg shasta issues

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

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Merge DocumentFork branch to document the switch to a new repository.

#298 paoloczi closed 1 year ago
0
Diploid assembly with trios

#297 ssgross closed 1 year ago
3
Question on assembly seeds.

#296 fmalmeida closed 1 year ago
2
assembly half the size it should be and low N50

#295 rob234king closed 1 year ago
9
If there is a way I can know which raw reads go to a specific contig?

#294 WenyuLiang closed 1 year ago
4
how to collapse trio-binned ONT reads

#293 COMInterop closed 1 year ago
4
cross-link to shasta-docs github pages site

#292 bkmartinjr closed 2 years ago
0
Do not hardcode BLAS and Lapack libraries. Find them!

#291 ccoulombe closed 1 year ago
11
Invalid option in Nanopore-UL-Jun2020 and Nanopore-Jun2020

#290 LYC-vio closed 2 years ago
4
Shasta on 30 X data

#289 ziphra closed 2 years ago
10
Add improved guppy5 Bayesian config

#288 rlorigro closed 2 years ago
0
Update QuickStart.html with latest releases

#287 0seastar0 closed 2 years ago
2
Local assembly using Shasta

#286 ctl43 closed 2 years ago
7
.csv visualization

#285 RasmusBuntzen closed 2 years ago
2
Update README.md to fix broken link to assemblies

#284 0seastar0 closed 2 years ago
0
Update Commands.html

#283 0seastar0 closed 2 years ago
0
Update Introduction.html for consistency of wording across docs

#282 0seastar0 closed 2 years ago
0
Update ReportingBugs.html

#281 0seastar0 closed 2 years ago
0
Update InspectingResults.html

#280 0seastar0 closed 2 years ago
2
Update CommandLineOptions.html

#279 0seastar0 closed 2 years ago
0
Update BuildingFromSource.html

#278 0seastar0 closed 2 years ago
0
Short unphased regions in phased assembly

#277 drs closed 2 years ago
5
Update ComputationalMethods.html

#276 0seastar0 closed 2 years ago
0
Correcting spelling and grammar in Running.html

#275 0seastar0 closed 2 years ago
0
Fails to build with pybind 2.8.1

#274 nileshpatra closed 2 years ago
8
Configure file on Q20 reads

#273 zyj1729 closed 1 year ago
7
Advice on optimising assembly for a region containing segmental duplication

#272 smf96 closed 2 years ago
34
Yes, in its current status Shasta is not able to assemble telomere sequence. I am hoping to be able to devote some time later this year to developing algorithm improvements that permit assembly of centromeres and telomeres.

#271 jflucier closed 2 years ago
5
fasta header with no sequence

#270 colindaven closed 2 years ago
5
How to specify the output dir ?

#269 xiucz closed 2 years ago
4
CMake not using FindBLAS

#268 ocaisa closed 2 years ago
5
fixed punctuation error

#267 0seastar0 closed 2 years ago
0
Is shasta suitable for tumor sample with complex SV?

#266 charliechen912ilovbash closed 2 years ago
9
HG004 Truth Assembly Availability

#265 janetxinli closed 2 years ago
2
ERROR: guppy-5.0.7-a is not a built-in Bayesian model

#264 madagiurgiu25 closed 2 years ago
2
Minor fixes for phase comparison script

#263 rlorigro closed 3 years ago
0
Add script to compare phasing with MarginPhase

#262 rlorigro closed 3 years ago
0
Sample command for assembly of reads generated by Guppy v5

#261 apredeus closed 3 years ago
2
Add option to use original read name in WriteLocalReadGraph

#260 rlorigro closed 3 years ago
0
Run time error ONT.fastq file

#259 khush876 closed 3 years ago
7
Fix Data access for browser AlignmentCandidate graph

#258 rlorigro closed 3 years ago
2
No recipe on bioconda for 0.7.0

#257 hoelzer closed 3 years ago
4
Remove quality threshold for ref annotation

#256 rlorigro closed 3 years ago
0
Runtime error exception

#255 Mondlii closed 3 years ago
2
Minor changes to candidate writing

#254 rlorigro closed 3 years ago
0
Export method for marker alignments

#253 rlorigro closed 3 years ago
1
New method for writing local candidate graph reads

#252 rlorigro closed 3 years ago
0
Refactor ReadGraph creation method 2 and add additional output method

#251 rlorigro closed 3 years ago
0
--Reads.minReadLength

#250 Saeideh-Ashouri closed 3 years ago
14
Add option to write candidates and edges using full read names

#249 rlorigro closed 3 years ago
0