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chanzuckerberg
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shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
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Update InstallPrerequisites-Ubuntu.sh to work with --no-install-recommends
#248
kislyuk
closed
3 years ago
0
MacOS build fails due to failure to install SeqAn
#247
paoloczi
closed
3 years ago
8
Fix misnamed parameter
#246
rlorigro
closed
3 years ago
0
Add write methods/scripts for candidates and read graph edges
#245
rlorigro
closed
3 years ago
0
Better documentation for palindrome filtering
#244
rlorigro
closed
3 years ago
0
What config should be used for reads basecalled with a mix of guppy versions?
#243
gitcruz
closed
3 years ago
5
building for macOS 11
#242
AustinHartman
closed
3 years ago
1
Fix formatting
#241
rlorigro
closed
3 years ago
0
Write palindrome names separately to CSV
#240
rlorigro
closed
3 years ago
0
Add filter command to main executable
#239
rlorigro
closed
3 years ago
0
Fix typo and approximate number of markers
#238
AustinHartman
closed
3 years ago
3
Add palindrome q filter
#237
rlorigro
closed
3 years ago
1
Please contemplate supporting compatibility with old kernels
#236
gitcruz
closed
3 years ago
10
Palindrome quality classifier
#235
rlorigro
closed
3 years ago
1
Good assembly result but many <100bp contigs
#234
ASLeonard
closed
3 years ago
3
If MinKNOW was used for basecalling what kind of consensus caller for repeat counts (-- Assembly.consensusCaller) can I use?
#233
ElviraTo
closed
3 years ago
2
Can SHASTA be run in a CPU & GPU, or GPU only mode?
#232
cement-head
closed
3 years ago
1
Browser
#231
rlorigro
closed
3 years ago
0
Documentation
#230
rlorigro
closed
3 years ago
0
Support for macOS 11 (Big Sur)
#229
paoloczi
closed
3 years ago
5
Browser updates - reference comparison
#228
rlorigro
closed
3 years ago
0
Difficulty to assemble a tandem duplication
#227
CTriay
closed
3 years ago
2
Assembling simulated reads
#226
jakewendt
closed
3 years ago
3
spelling fixes
#225
mr-c
closed
3 years ago
1
upgrade to spoa 4.0.6
#224
mr-c
closed
2 years ago
12
Browser
#223
rlorigro
closed
3 years ago
0
Move writeColorPicker into Assembler
#222
rlorigro
closed
3 years ago
0
Add bonito v0.3.1 Bayesian config file
#221
rlorigro
closed
3 years ago
0
Add color picker to candidate alignment graph visualization
#220
rlorigro
closed
3 years ago
1
Error reading from ~/path-to-fastq/*.fastq near offset 0
#219
agnibhat
closed
3 years ago
14
Add new browser page for candidate visualization
#218
rlorigro
closed
3 years ago
0
Parameter suggestions for highly repetitive but homozygous plant genome
#217
davidecarlson
closed
3 years ago
12
Add candidate indexing and candidate graph
#216
rlorigro
closed
3 years ago
1
Runtime error "Does not begin with @"
#215
Meadowlion
closed
3 years ago
3
Prep for release 0.7.0
#214
bagashe
closed
3 years ago
0
Runtime error exception: AssemblyPathGraph2.cpp line 635 - With minReadLength = 6000
#213
EinarBaldvin
closed
3 years ago
5
Bug in superbubble removal
#212
paoloczi
closed
3 years ago
2
Problem running on macOS 10.14 (Mojave)
#211
paoloczi
closed
3 years ago
1
Remove the temp buffer used to check if O_DIRECT can be used.
#210
bagashe
closed
3 years ago
0
Incorrect CIGAR strings in single-stranded GFA output, Assembly.gfa
#209
paoloczi
closed
3 years ago
2
Handle O_DIRECT errors gracefully.
#208
bagashe
closed
3 years ago
0
Handle O_DIRECT errors gracefully.
#207
bagashe
closed
4 years ago
1
Truncated graph displays
#206
paoloczi
closed
3 years ago
2
Remove docker image creation code and cleanup documentation.
#205
bagashe
closed
4 years ago
0
Move libpng-dev to the minimal install since it is currently used outside the HTTP server.
#204
bagashe
closed
4 years ago
0
Post release cleanup
#203
bagashe
closed
4 years ago
0
Error produced when using --Reads.noCache multithreaded
#202
ppapasaikas
closed
3 years ago
15
Prepare for release v0.6.0
#201
bagashe
closed
4 years ago
0
very small assembly size - low coverage?
#200
dcopetti
closed
3 years ago
10
Fix compilation warning about different integer types
#199
bagashe
closed
4 years ago
0
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