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chanzuckerberg
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shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
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Merge DocumentFork branch to document the switch to a new repository.
#298
paoloczi
closed
2 years ago
0
Diploid assembly with trios
#297
ssgross
closed
2 years ago
3
Question on assembly seeds.
#296
fmalmeida
closed
2 years ago
2
assembly half the size it should be and low N50
#295
rob234king
closed
2 years ago
9
If there is a way I can know which raw reads go to a specific contig?
#294
WenyuLiang
closed
2 years ago
4
how to collapse trio-binned ONT reads
#293
COMInterop
closed
2 years ago
4
cross-link to shasta-docs github pages site
#292
bkmartinjr
closed
2 years ago
0
Do not hardcode BLAS and Lapack libraries. Find them!
#291
ccoulombe
closed
2 years ago
11
Invalid option in Nanopore-UL-Jun2020 and Nanopore-Jun2020
#290
LYC-vio
closed
2 years ago
4
Shasta on 30 X data
#289
ziphra
closed
2 years ago
10
Add improved guppy5 Bayesian config
#288
rlorigro
closed
2 years ago
0
Update QuickStart.html with latest releases
#287
0seastar0
closed
2 years ago
2
Local assembly using Shasta
#286
ctl43
closed
2 years ago
7
.csv visualization
#285
RasmusBuntzen
closed
2 years ago
2
Update README.md to fix broken link to assemblies
#284
0seastar0
closed
2 years ago
0
Update Commands.html
#283
0seastar0
closed
2 years ago
0
Update Introduction.html for consistency of wording across docs
#282
0seastar0
closed
2 years ago
0
Update ReportingBugs.html
#281
0seastar0
closed
2 years ago
0
Update InspectingResults.html
#280
0seastar0
closed
2 years ago
2
Update CommandLineOptions.html
#279
0seastar0
closed
2 years ago
0
Update BuildingFromSource.html
#278
0seastar0
closed
2 years ago
0
Short unphased regions in phased assembly
#277
drs
closed
2 years ago
5
Update ComputationalMethods.html
#276
0seastar0
closed
2 years ago
0
Correcting spelling and grammar in Running.html
#275
0seastar0
closed
2 years ago
0
Fails to build with pybind 2.8.1
#274
nileshpatra
closed
2 years ago
8
Configure file on Q20 reads
#273
zyj1729
closed
2 years ago
7
Advice on optimising assembly for a region containing segmental duplication
#272
smf96
closed
2 years ago
34
Yes, in its current status Shasta is not able to assemble telomere sequence. I am hoping to be able to devote some time later this year to developing algorithm improvements that permit assembly of centromeres and telomeres.
#271
jflucier
closed
2 years ago
5
fasta header with no sequence
#270
colindaven
closed
2 years ago
5
How to specify the output dir ?
#269
xiucz
closed
2 years ago
4
CMake not using FindBLAS
#268
ocaisa
closed
2 years ago
5
fixed punctuation error
#267
0seastar0
closed
2 years ago
0
Is shasta suitable for tumor sample with complex SV?
#266
charliechen912ilovbash
closed
3 years ago
9
HG004 Truth Assembly Availability
#265
janetxinli
closed
3 years ago
2
ERROR: guppy-5.0.7-a is not a built-in Bayesian model
#264
madagiurgiu25
closed
3 years ago
2
Minor fixes for phase comparison script
#263
rlorigro
closed
3 years ago
0
Add script to compare phasing with MarginPhase
#262
rlorigro
closed
3 years ago
0
Sample command for assembly of reads generated by Guppy v5
#261
apredeus
closed
3 years ago
2
Add option to use original read name in WriteLocalReadGraph
#260
rlorigro
closed
3 years ago
0
Run time error ONT.fastq file
#259
khush876
closed
3 years ago
7
Fix Data access for browser AlignmentCandidate graph
#258
rlorigro
closed
3 years ago
2
No recipe on bioconda for 0.7.0
#257
hoelzer
closed
3 years ago
4
Remove quality threshold for ref annotation
#256
rlorigro
closed
3 years ago
0
Runtime error exception
#255
Mondlii
closed
3 years ago
2
Minor changes to candidate writing
#254
rlorigro
closed
3 years ago
0
Export method for marker alignments
#253
rlorigro
closed
3 years ago
1
New method for writing local candidate graph reads
#252
rlorigro
closed
3 years ago
0
Refactor ReadGraph creation method 2 and add additional output method
#251
rlorigro
closed
3 years ago
0
--Reads.minReadLength
#250
Saeideh-Ashouri
closed
3 years ago
14
Add option to write candidates and edges using full read names
#249
rlorigro
closed
3 years ago
0
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