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I am currently conducting a research project on endometriosis, and the spatial transcriptomic data presented in your article would be invaluable for my study. I was wondering if you would be willing t…
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Hi. Thanks for developing this tool!
Is it possible to have an update that would make the tool compatible with the latest version of Seurat? Two things I noticed that may need to be changed are:
…
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Hello everyone.
Im having some trouble loading data into the web app of Azimuth. Previously in RStudio Ive created a RDS file and then try to loading it into Azimuth but it throws the following er…
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Hi,
Wonderful job!
I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how [Shinycell](https://github.com/SGDDN…
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> In progress: we are perfecting the functionality to add a precomputed KNN graph (for example constructed with Seurat or scanpy) to the graph slot using the adjacency matrix.
It has been in the vi…
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Hi,
is the current release (v2.0.4) not compatible with Seurat v4.4 objects?
`doubletFinder(seu, PCs = 1:10, pN = 0.25, pK = 0.09, nExp = nExp_poi, reuse.pANN = FALSE, sct = FALSE)`
gives
`Er…
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Seurat and SeuratObject 5.0.1 installed from CRAN.
Attempting to merge SeuratObjects with "collapse=TRUE" results in error "Collapsing layers is not yet supported". I can see also in the current GitH…
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I had multiple seurat objects and I wrote each to disk then merged them. How to save this object ? Do I just saveRDS()? or do I write it into a matrix first?
write_matrix_dir(mat = object1[["RNA"]]…
Flu09 updated
4 months ago
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Hello, I have different conditions and their controls and I am interested in using scGRN but I am not sure how to start. I am familiar with pyscenic and computing aucell and RSS. How to use scGRN when…
Flu09 updated
1 month ago
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Hi,
When I am running this code I get the following error, is there any solution?
**monocle_cds eval -> as -> asMethod -> .handleSimpleError -> h**
The following is the basic content of my d…