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Nice tool, congratulations! I would like to use it on 10x ATAC/multiome data. Could you please explain the following?
1. It would be great to see an example of how to start from `fragment.tsv.gz` s…
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Dear CEMBA team,
I am trying to write fragments bed files to disk through an AnnDataSet object (with all 2.3M cells from all .h5ad sample files; `AnnDataSet object with n_obs x n_vars = 2355842 x 5…
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https://mp.weixin.qq.com/s/-vpaI5A22RXImv9KJ2Jf5w
ixxmu updated
8 months ago
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https://mp.weixin.qq.com/s/zFq-uIfb56FBTrIqW5T-yw
ixxmu updated
8 months ago
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Hi Signac's team.
I'm recently run a footprinting analysis in my dataset. I used _footprint()_ function on the default configuration and then I extract data using _GetFootprintingData()_ function. Th…
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I could not find code to produce a new Tn5 bias model for my model species (maize). Any advice on how to go about this? Looks like a great tool!
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Version: 0.8.0rc1
Example:
```python
>>> import anndata as ad
>>> a = ad.AnnData(shape=(10, 20))
>>> a
AnnData object with n_obs × n_vars = 10 × 20
>>> a.write("1.h5ad")
>>> b = ad.read("1…
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# 生信爱好者周刊(第 94 期):
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discussi…
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Hello TOBIAS developer,
I read the paper published by [Steven Henikoff](https://www.nature.com/articles/s41467-019-09982-5#auth-Steven-Henikoff).
They show "CUT&Tag protects a “footprint” spanning …
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Hello,
See the title. `chrombpnet pipeline` gave me three files in the `models` folder, not sure which one should be used in `chrombpnet contribs_bw`.
Best,
Dongze