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Hi I executed tsne using same parameters in RStudio [3.4.2] and Alteryx R module [3.5.3] and got very different results. Any thoughts? Both have same tsne package version. no other packages are involv…
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Wondering if is possible to use threads. I was applying tsne to a dataset of size(50K,10) and it is really slow.
Can you give advice to handle big datasets?
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#### Describe the workflow you want to enable
If I'm using TruncatedSVD in a pipeline, it'd be nice to have an option to automatically set n_components < n_features, if n_components >= n_features.
…
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I use this command to compile from the main page:
```bash
g++ -std=c++11 -O3 src/sptree.cpp src/tsne.cpp src/nbodyfft.cpp -o bin/fast_tsne -pthread -lfftw3 -lm
```
but got a warning, and the pro…
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Hi @all,
Thanks to develop the great tools,
I encounter a pecular problem on bbknn integrated data.
i follow the workflow code to run the data integrated,the code showing below,
#
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Hi,
Your algorithm seems great but I can't get it to work with my own data. Can you understand what's wrong?
countma[1:4,1:4]
```
> cell_0 cell_2 cell_3 cell_6
> HAL …
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**Describe the bug**
cuML's t-SNE outputs vary from run to run, even when `random_state` is used or initial embeddings are provided (and #2549 is fixed).
**Steps/Code to reproduce bug**
```py
fr…
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Hi, @clementfarabet
How can I make the tsne_map.png ?
Is there any script to making the tsne_map.png from my images ?
Thanks in advances ~
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I would like to run velocyto on a set of cells that have already been analyzed with Seurat. Rather than re-computing a new set of clusters, dimensionality reductions etc I would like to use the data f…
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Hi, I am new to nanodisco and methylation profile analysis in general. I have come across the same issue multiple times while trying to perform methylation binning on a nanopore sequenced dataset comp…