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KlugerLab
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FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
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Windows installation -
#126
mah533
closed
1 year ago
1
Segmentation fault sometime
#125
Rikin04
opened
1 year ago
0
compile fitsne error
#124
zyh3826
opened
2 years ago
3
results file (results_date_seed-.dat) is not created
#123
gblock173
closed
2 years ago
3
FFT supports only 2 components
#122
ghost
opened
2 years ago
0
Integer Overflow? Large datasets
#121
TonyX26
opened
3 years ago
0
Memory Allocation Failed - Large Datasets
#120
TonyX26
opened
3 years ago
7
works on windows, calls correct binary now
#119
sg-s
closed
1 year ago
1
should work on windows too
#118
sg-s
closed
3 years ago
1
Is the PyPI version up to date?
#117
hyhuang00
closed
3 years ago
3
Python: adding unique IO file names and file cleanup
#116
jlause
closed
3 years ago
1
Write data files to a temporary directory to avoid collisions and clutter
#115
biederfrau
closed
3 years ago
2
processing extremely large data sets
#114
jtao
closed
3 years ago
1
Fix sourcing of rsvd and irlba in R wrapper.
#113
DillonHammill
closed
3 years ago
1
Fix sourcing of rsvd/irlba to return more meaningful error
#112
DillonHammill
closed
3 years ago
2
need to require rsvd package in R wrapper
#111
mmp3
closed
3 years ago
3
Could not run in Google Colab
#110
sabotaha
opened
3 years ago
1
Error in pip install fitsne
#109
Zifeng-L
opened
3 years ago
9
Installation error in OSX
#108
am610
closed
3 years ago
1
Using no AVX instructions
#107
hahmad2008
closed
4 years ago
5
Always get an error about version when using this in SEURAT 3.1.5
#106
MeganQiu
opened
4 years ago
3
update fast_tsne.R
#105
JunZhao1990
closed
4 years ago
2
Update fast_tsne.m
#104
fancy23
opened
4 years ago
6
Minor update to fast_tsne.R to avoid R CMD CHECK warnings.
#103
DillonHammill
closed
4 years ago
1
Confusing instructions for Windows installation
#102
pavlin-policar
closed
4 years ago
1
dyld: Library not loaded: @rpath/libfftw3.3.dylib with conda FFTW
#101
pavlin-policar
closed
4 years ago
4
Passing perplexity_list in R?
#100
hummuscience
opened
4 years ago
1
Error while compiling FIt-SNE v1.1.0 or 1.0.0 solved Fedora 31 5.6.8-200 while using with Seurat 3.1
#99
rafalwoycicki
opened
4 years ago
9
Fixing compile errors on Windows
#98
linqiaozhi
closed
4 years ago
3
Recommended Parameters for > 3 million cells
#97
mdmanurung
closed
4 years ago
8
How to install KlugerLab / FIt-SNE for Seurat usage in Windows 10 system
#96
grimwoo
opened
4 years ago
0
Windows executable for Version 1.2.0 not compiling
#95
linqiaozhi
closed
4 years ago
5
Default value for momentum switch iteration
#94
dkobak
closed
4 years ago
2
Changing the defaults in the Python wrapper
#93
dkobak
closed
4 years ago
53
Observation weights
#92
ilyakorsunsky
opened
4 years ago
1
Conda package / new release?
#91
raivivek
closed
4 years ago
13
Default start_late_exag_iter
#90
dkobak
closed
4 years ago
1
Barnes-Hut by default for small N
#89
dkobak
closed
4 years ago
22
Default learning rate
#88
dkobak
closed
4 years ago
38
cleaned up and refactored MATLAB wrapper
#87
sg-s
closed
4 years ago
1
FIt-SNE with MATLAB wrapper significanlty slower than built-in implementation...????
#86
sg-s
closed
4 years ago
3
Annoy warnings
#85
dkobak
closed
4 years ago
3
Variable DF for 1D
#84
linqiaozhi
closed
4 years ago
0
Error about dimension
#83
zhaixzh
closed
4 years ago
6
Precomputed distance matrix (take 2)
#82
sg-s
closed
4 years ago
16
annoylib does not compile using g++ 9
#81
dkobak
closed
4 years ago
3
No multithreading after running RunTSNE with "test.method="FIt-SNE", nthreads = 8"
#80
kaizen89
closed
4 years ago
2
Do I need to install FFTW for windows? If I am using Python
#79
Dadatata-JZ
closed
4 years ago
4
Variable degree of freedom is not supported for 1D
#78
dkobak
closed
4 years ago
11
How to properly pass the perplexity_list parameter?
#77
davisidarta
closed
5 years ago
1
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